userguide:peptidesandproteingrouping
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userguide:peptidesandproteingrouping [2012/03/29 09:01] 132.168.72.131 |
userguide:peptidesandproteingrouping [2012/03/29 09:01] 132.168.72.131 |
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| {{ :peptidegrouping.png|}} A new peptide is construct as follow : | {{ :peptidegrouping.png|}} A new peptide is construct as follow : | ||
| - | * from the first child peptide found : | + | * ''peptide reference (sequence, ptm), missed cleavage and calculated mass'' are copied from the first child peptide found : |
| - | * ''peptide reference (sequence, ptm), missed cleavage and calculated mass'' are copied | + | * ''experimental mass, charge, delta mass, score, retention time and fragmentation count'' are copied from the best child : |
| - | * from the best child : | + | |
| - | * ''experimental mass, charge, delta mass, score, retention time and fragmentation count'' are set | + | |
| * ''child list'' is set as peptides with same sequence, same mass are found | * ''child list'' is set as peptides with same sequence, same mass are found | ||
| * to define the ''matches list'' associated to new peptide, matches from all child peptides are grouped using matched protein. Created match ''score'' is set to the max of all child matches scores and ''start and end'' value are equal to child matches start and end. | * to define the ''matches list'' associated to new peptide, matches from all child peptides are grouped using matched protein. Created match ''score'' is set to the max of all child matches scores and ''start and end'' value are equal to child matches start and end. | ||
userguide/peptidesandproteingrouping.txt · Last modified: 2012/03/29 09:02 by 132.168.72.131
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