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Full release note with fixes issues is available on project management web application (using RedMine).

Released on 08/MAR/2011

hEIDI 1.10.1 is based on MSIdb E.1

• Pride Export
  • Fixed bugs & enhanced .xml formating to be conform to PRIDE requirements + changed WIKI pages (Redundant PTMs, null ion parent intensity, redundant spectrum in leucine/isoleucine case, wrong m/z for precursor, wrong spectrumRef for precursor, no fragment matches in leucine/isoleucine case, wrong SearchEngine, wrong fragment match count, shortened databaseVersion, changed place for parent charge, added fragment ion annotations, skipped masked proteins/peptides)

• Database
  • User can populate MSIdb with spectrum details (spectra & fragment matches)

Released on 01/FEB/2011

hEIDI 1.10.0 is based on MSIdb E.1

• Algorithms
  • “Compare each other”/“Compare with children” algorithms and their different result windows are now replaced by a unique algorithm/Result window. As well, multiple contexts, even without any parent/children relation can be compared to their union
  • You can now recompute retention time, in one pass, for the selected User context and all of their child contexts
  • Filtering (i.e. masked peptides/proteins/protein groups) can be reset for one or several selected User context(s) and optionnaly for all of their child contexts
  • Fixed a bug regarding “peptide count” filter, when specifying only a number of peptides
  • Fixed a bug regarding all filters (they applied systematically to all child contexts instead of the selected context)

• Export
  • Progress bar added when exporting to AMT database

• hEIDI Project
  • Close all opened windows when an hEIDI Project is disconnected from its MSIdb. Memory is released

• Peptide view
  • Workaround for duplicated PTMs in peptide view (#1929) (while waiting for a more robust SQL fix)

Released on 28/OCT/2010

hEIDI 1.9.0 is based on MSIdb E.1

• MSI database
  • New E.1 MSIdb model is partially supported (quantitation information, for instance, is not yet visible in hEIDI but nevertheless, user can query quantitation tables using SQL)

• Peptide view
  • Fixed a bug when displaying masked peptide in a filtered context

• Algorithms
  • You can compare a external list of accession numbers with all proteins of a selected context

Released on 12/OCT/2010

hEIDI 1.8.0 is based on MSIdb D.3, but D.4 is required if your are using PRIDE XML Export

• Export
  • A Context can now be exported into PRIDE XML format

Released on 10/SEP/2010

hEIDI 1.7.0 is based on MSIdb D.3

• Identification view
  • Sample & Study names can now be displayed in the identification window using the 'fill sample information' menu

• Peptide view
  • Added “Typical(s) Matching” column to display the number and the accession of master protein matches

• Algorithms
  • Context comparison has been modified: when 2 Protein Groups have a same (even 0) peptide similarity, their protein similarity is taken into account. If the protein similarity is the same as well (with a non-zero peptide similarity), All Protein Similarity is used to discriminate the two groups

• Reporting
  • 'Protein Group Details' report:
    • Added the “#Master protein matches:Master protein matches” column
    • Added the number and list of PTMs
    • Removed the “state” column
  • 'Peptide Details' report:
    • Changed the “#Master protein matches:Master protein matches” column to only display accession for typical protein matches

• Context saving
  • Correct end message when context saving has failed

• MSI Database
  • Increased size of 'name' field for 'property_group' table

Released on 04/AUG/2010

hEIDI 1.6.1 is based on MSIdb D.3

Fix urgent issues.

Released on 03/AUG/2010

hEIDI 1.6.0 is based on MSIdb D.3

• Data
  • Run & Sample information can be automatically retrieved from ePims WebService

• Algorithms
  • Protein grouping is memory tuned
  • Retention Time Alignment
  • Retention Time Recomputing
  • Compute spectral count for proteotypic peptides only

• AMT database
  • UMCs from several Conglomerate files can be included in AMT database
  • Removed wrong 1-N relationship between AMT_Proteins & protein_to_protein_group_map tables
  • Added new field descriptions for AMT_Proteins, protein_group & protein_to_protein_group_map tables

• Peptides view
  • Navigating through child species from a given species node is now possible
  • Added a new column: # of distinct identifications where the peptide has been seen

• Reporting
  • 'Peptide Details' report:
    • Added a column for protein accession
    • Size of 'Sequence' field has been increased
  • 'Summary' report:
    • Size of 'Description' field has been increased

Released on 27/APR/2010

hEIDI 1.5.0 is based on MSIdb D.3

• Protein filtering / Peptide grouping criteria
• Save of used parameters (as context properties) for the following operations: “Change typical protein”, “Species/Protein Grouping”, “Putative protein filtering”
• New reports:
  • Sameset and Subset proteins for each protein group
  • Peptide list
• Ascending order of child contexts

Release date : 29/01/2010 Summary

See all issues on redmine project https://bioproj.extra.cea.fr/redmine/projects/heidi/issues?query_id=3

Features : - Projects managment - Contexts Comparison result backup - Visualisation of peptides hierarchy - spectral count bugs (none display value, empty export…) - AMT export in new database model.

Released 09/17/2009

IHM

• Change table row default height
• Comparison
  • add custum multiple contexts comparison table.
  • add dynamically generic properties (spectral count…) to multiple context comparison table

Feature

• Add graphical reports view for selected contexts' peptides
• Enable protein grouping on proteins imported with CSV file.
• Enable Identification properties edition

Others

• Export AMT bug fixe : Protein description column was too small.
• Dynamic report export bug fixe.

• Multiple contexts comparison
  • from common root context
• Results export
  • Read Viper output and save data in AMT db
  • Display PTMs in peptides list
  • Action management
    • Confirmation / error message dialogs
    • Uses ProgressBar for long actions

• Add spectral count module
• Peptides views
  • Peptide detail : allow multiple windows to see many peptides descriptions in the same time (uses pin feature to freese windows)
  • Context's peptide list
• Proteins view
  • Allow multiple window (using pin feature)
  • Context's proteins list
• Export
  • Export a context into AMT db format
  • Export 2 contexts comparison result
  • Add a customizable context export
• Features added
  • Remove “Search” Context
  • Save “User” contexts back to MSIdb
• Update properties displaued for identification, proteins, peptides..