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Full release note with fixes issues is available on project management web application (using RedMine).

Released on 28/OCT/2010

hEIDI 1.9.0 is based on MSIdb E.1 ===== hEIDI 1.8.0 ===== Released on 12/OCT/2010 hEIDI 1.8.0 is based on MSIdb D.3, but D.4 is required if your are using PRIDE XML Export * Export * A Context can now be exported into PRIDE XML format ===== hEIDI 1.7.0 ===== Released on 10/SEP/2010 hEIDI 1.7.0 is based on MSIdb D.3 * Identification view * Sample & Study names can now be displayed in the identification window using the 'fill sample information' menu * Peptide view * Added “Typical(s) Matching” column to display the number and the accession of master protein matches * Algorithms * Context comparison has been modified: when 2 Protein Groups have a same (even 0) peptide similarity, their protein similarity is taken into account. If the protein similarity is the same as well (with a non-zero peptide similarity), All Protein Similarity is used to discriminate the two groups * Reporting * 'Protein Group Details' report: * Added the “#Master protein matches:Master protein matches” column * Added the number and list of PTMs * Removed the “state” column * 'Peptide Details' report: * Changed the “#Master protein matches:Master protein matches” column to only display accession for typical protein matches * Context saving * Correct end message when context saving has failed * MSI Database * Increased size of 'name' field for 'property_group' table ===== hEIDI 1.6.1 ===== Released on 04/AUG/2010 hEIDI 1.6.1 is based on MSIdb D.3 Fix urgent issues. ===== hEIDI 1.6.0 ===== Released on 03/AUG/2010 hEIDI 1.6.0 is based on MSIdb D.3 * Data * Run & Sample information can be automatically retrieved from ePims WebService * Algorithms * Protein grouping is memory tuned * Retention Time Alignment * Retention Time Recomputing * Compute spectral count for proteotypic peptides only * AMT database * UMCs from several Conglomerate files can be included in AMT database * Removed wrong 1-N relationship between AMT_Proteins & protein_to_protein_group_map tables * Added new field descriptions for AMT_Proteins, protein_group & protein_to_protein_group_map tables * Peptides view * Navigating through child species from a given species node is now possible * Added a new column: # of distinct identifications where the peptide has been seen * Reporting * 'Peptide Details' report: * Added a column for protein accession * Size of 'Sequence' field has been increased * 'Summary' report: * Size of 'Description' field has been increased ===== hEIDI 1.5.0 ===== Released on 27/APR/2010 hEIDI 1.5.0 is based on MSIdb D.3**

• Protein filtering / Peptide grouping criteria
• Save of used parameters (as context properties) for the following operations: “Change typical protein”, “Species/Protein Grouping”, “Putative protein filtering”
• New reports:
  • Sameset and Subset proteins for each protein group
  • Peptide list
• Ascending order of child contexts

Release date : 29/01/2010 Summary

See all issues on redmine project https://bioproj.extra.cea.fr/redmine/projects/heidi/issues?query_id=3

Features : - Projects managment - Contexts Comparison result backup - Visualisation of peptides hierarchy - spectral count bugs (none display value, empty export…) - AMT export in new database model.

Released 09/17/2009

IHM

• Change table row default height
• Comparison
  • add custum multiple contexts comparison table.
  • add dynamically generic properties (spectral count…) to multiple context comparison table

Feature

• Add graphical reports view for selected contexts' peptides
• Enable protein grouping on proteins imported with CSV file.
• Enable Identification properties edition

Others

• Export AMT bug fixe : Protein description column was too small.
• Dynamic report export bug fixe.

• Multiple contexts comparison
  • from common root context
• Results export
  • Read Viper output and save data in AMT db
  • Display PTMs in peptides list
  • Action management
    • Confirmation / error message dialogs
    • Uses ProgressBar for long actions

• Add spectral count module
• Peptides views
  • Peptide detail : allow multiple windows to see many peptides descriptions in the same time (uses pin feature to freese windows)
  • Context's peptide list
• Proteins view
  • Allow multiple window (using pin feature)
  • Context's proteins list
• Export
  • Export a context into AMT db format
  • Export 2 contexts comparison result
  • Add a customizable context export
• Features added
  • Remove “Search” Context
  • Save “User” contexts back to MSIdb
• Update properties displaued for identification, proteins, peptides..