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- | ====== Protein grouping ====== | ||
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- | ===== Algorithm ===== | ||
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- | ==== Step 1 - Peptide grouping ==== | ||
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- | Peptides from different identifications - attached directly or indirectly to a context - are grouped.\\ | ||
- | Peptides must have same sequence and same experimental mass to be grouped.\\ | ||
- | Peptide grouping results in **new** peptides attached to the parent context and having child peptides | ||
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- | {{proteinGrouping:GroupingStep1.png?248x148}} | ||
- | ==== Step 2 - Protein grouping ==== | ||
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- | Peptides from a same protein or a same protein set are grouped.\\ | ||
- | Protein grouping results in **new** groups of proteins and peptides, attached to the parent context. | ||
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- | {{proteinGrouping:GroupingStep2.png?271x186}} | ||
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- | ===== GUI ===== | ||
- | {{:proteingrouping:proteingroupingaction.png|}} | ||
- | {{:proteingrouping:proteingroupingparam.png?350}} | ||
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- | After having grouped proteins in a given context, then the context name is red in the MSIExplorer view. | ||
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