how_to:start
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how_to:start [2012/02/28 16:24] 132.168.73.124 |
how_to:start [2013/01/28 08:09] (current) 132.168.72.131 |
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| ===== Visualization ===== | ===== Visualization ===== | ||
| * [[browseContextProtGroups|Browse all context's protein groups]] | * [[browseContextProtGroups|Browse all context's protein groups]] | ||
| - | * **Changed** :!: [[peptideView|visualize all context's peptides]] | + | * [[peptideView|visualize all context's peptides]] |
| * [[viewProtgroups|visualize protein groups ]] information details | * [[viewProtgroups|visualize protein groups ]] information details | ||
| * [[graphicalPlotPeptides|generate a graph (histograms, plots...) on peptides features]] | * [[graphicalPlotPeptides|generate a graph (histograms, plots...) on peptides features]] | ||
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| * [[editIdentificationInfos|view and edit identification informations (general information ans run/sample)]] | * [[editIdentificationInfos|view and edit identification informations (general information ans run/sample)]] | ||
| * [[accessspectralcountdata|run and/or view spectral count data]] | * [[accessspectralcountdata|run and/or view spectral count data]] | ||
| + | * :!: **New** [[accessadjustedspectralcountdata|run and/or view adjusted spectral count data]] | ||
| * [[accessProperties|access object properties, show/hide columns in a tree view, filter columns in a tree view]] | * [[accessProperties|access object properties, show/hide columns in a tree view, filter columns in a tree view]] | ||
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| ===== Save, import and export ===== | ===== Save, import and export ===== | ||
| * [[exportContext|export identified proteins & peptides from a context]] | * [[exportContext|export identified proteins & peptides from a context]] | ||
| - | * **Changed** :!: [[exportComparison|export a comparison result]] | + | * [[exportComparison|export a comparison result]] |
| * [[saveComparison|save/load a comparison result]] | * [[saveComparison|save/load a comparison result]] | ||
| * [[saveToMSIdb|save modifications back to the MSIdb]] | * [[saveToMSIdb|save modifications back to the MSIdb]] | ||
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| * [[exportPrideLog|[PRIDE] view PRIDE log]] | * [[exportPrideLog|[PRIDE] view PRIDE log]] | ||
| * [[exportAdHocExport|[Ad-hoc export] on-demand exports]] | * [[exportAdHocExport|[Ad-hoc export] on-demand exports]] | ||
| - | * **Changed** :!: [[exportadhocexport_ppmswleaves|[Ad-hoc export] export Protein Groups, Peptides and Leaves]] | + | * [[exportadhocexport_ppmswleaves|[Ad-hoc export] export Protein Groups, Peptides and Leaves]] |
| * [[exportAdHocExport_N15|[Ad-hoc export, N15] export 15N data]] | * [[exportAdHocExport_N15|[Ad-hoc export, N15] export 15N data]] | ||
| - | * **New** :!: [[importUmcToMsiDb|[AMT] Import UMCs into MSIdb]] | + | * [[importUmcToMsiDb|[AMT] Import UMCs into MSIdb]] |
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| * [[proteinFiltering|filter proteins or protein groups]] | * [[proteinFiltering|filter proteins or protein groups]] | ||
| * [[resetProteinFiltering|reset protein/protein group filter]] | * [[resetProteinFiltering|reset protein/protein group filter]] | ||
| - | * **Changed** :!: [[compareMultiContexts|compare several contexts]] | + | * [[compareMultiContexts|compare several contexts]] |
| * [[compareContextWithExtAccession|compare a context with an external accession list]] | * [[compareContextWithExtAccession|compare a context with an external accession list]] | ||
| - | * **Changed** :!: [[accessspectralcountdata|run and/or view spectral count data]] | + | * [[accessspectralcountdata|run and/or view spectral count data]] |
| * [[idfFilters|check that all identifications have been filtered with the same parameters]] | * [[idfFilters|check that all identifications have been filtered with the same parameters]] | ||
| * [[writeSqlQueries|write SQL Queries to explore database]] | * [[writeSqlQueries|write SQL Queries to explore database]] | ||
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| * [[alignRetentionTime|[AMT] align retention time]] | * [[alignRetentionTime|[AMT] align retention time]] | ||
| * [[recomputeRetentionTime|[AMT] recompute retention time]] | * [[recomputeRetentionTime|[AMT] recompute retention time]] | ||
| - | * **New** :!: [[batchProcessing| make batch processing]] | + | * [[batchProcessing| make batch processing]] |
| - | * **New** :!: [[computeFalsePositiveRate|Compute False Positive Rate]] | + | * [[computeFalsePositiveRate|Compute False Positive Rate]] |
how_to/start.1330442644.txt.gz · Last modified: 2012/02/28 16:24 by 132.168.73.124
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