how_to:start
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
how_to:start [2012/02/24 14:00] 132.168.73.124 |
how_to:start [2013/01/28 08:09] (current) 132.168.72.131 |
||
|---|---|---|---|
| Line 10: | Line 10: | ||
| ===== Visualization ===== | ===== Visualization ===== | ||
| - | * [[browseContextProtGroups|browse context's protein groups]] | + | * [[browseContextProtGroups|Browse all context's protein groups]] |
| * [[peptideView|visualize all context's peptides]] | * [[peptideView|visualize all context's peptides]] | ||
| * [[viewProtgroups|visualize protein groups ]] information details | * [[viewProtgroups|visualize protein groups ]] information details | ||
| Line 17: | Line 17: | ||
| * [[editIdentificationInfos|view and edit identification informations (general information ans run/sample)]] | * [[editIdentificationInfos|view and edit identification informations (general information ans run/sample)]] | ||
| * [[accessspectralcountdata|run and/or view spectral count data]] | * [[accessspectralcountdata|run and/or view spectral count data]] | ||
| + | * :!: **New** [[accessadjustedspectralcountdata|run and/or view adjusted spectral count data]] | ||
| * [[accessProperties|access object properties, show/hide columns in a tree view, filter columns in a tree view]] | * [[accessProperties|access object properties, show/hide columns in a tree view, filter columns in a tree view]] | ||
| - | ===== Save and export ===== | + | ===== Save, import and export ===== |
| * [[exportContext|export identified proteins & peptides from a context]] | * [[exportContext|export identified proteins & peptides from a context]] | ||
| * [[exportComparison|export a comparison result]] | * [[exportComparison|export a comparison result]] | ||
| Line 28: | Line 29: | ||
| * [[spectrumMatchFeeder|populate MSI database with spectra]] | * [[spectrumMatchFeeder|populate MSI database with spectra]] | ||
| * [[generateAMTdb|[AMT] generate a new AMT database from a context]] | * [[generateAMTdb|[AMT] generate a new AMT database from a context]] | ||
| - | * [[includeUmcInAmtDb|[AMT] include UMCs in AMTdb]] | + | * <del>[[includeUmcInAmtDb|[AMT] include UMCs in AMTdb]]</del> (see Import UMCs into MSIdb) |
| * [[exportPride|[PRIDE] export context to PRIDE XML format]] | * [[exportPride|[PRIDE] export context to PRIDE XML format]] | ||
| * [[exportPrideLog|[PRIDE] view PRIDE log]] | * [[exportPrideLog|[PRIDE] view PRIDE log]] | ||
| Line 34: | Line 35: | ||
| * [[exportadhocexport_ppmswleaves|[Ad-hoc export] export Protein Groups, Peptides and Leaves]] | * [[exportadhocexport_ppmswleaves|[Ad-hoc export] export Protein Groups, Peptides and Leaves]] | ||
| * [[exportAdHocExport_N15|[Ad-hoc export, N15] export 15N data]] | * [[exportAdHocExport_N15|[Ad-hoc export, N15] export 15N data]] | ||
| + | * [[importUmcToMsiDb|[AMT] Import UMCs into MSIdb]] | ||
| | | ||
| Line 51: | Line 53: | ||
| * [[alignRetentionTime|[AMT] align retention time]] | * [[alignRetentionTime|[AMT] align retention time]] | ||
| * [[recomputeRetentionTime|[AMT] recompute retention time]] | * [[recomputeRetentionTime|[AMT] recompute retention time]] | ||
| - | * make [[batchProcessing|batch processing]] | + | * [[batchProcessing| make batch processing]] |
| * [[computeFalsePositiveRate|Compute False Positive Rate]] | * [[computeFalsePositiveRate|Compute False Positive Rate]] | ||
how_to/start.1330088448.txt.gz ยท Last modified: 2012/02/24 14:00 by 132.168.73.124
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
