how_to:start
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how_to:start [2011/02/01 11:12] 132.168.74.230 |
how_to:start [2013/01/28 08:09] (current) 132.168.72.131 |
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| * [[createContext|create new contexts to organize and compile identification results]] | * [[createContext|create new contexts to organize and compile identification results]] | ||
| * [[how_to:loadProject|reopen an existing hEIDI Project]] | * [[how_to:loadProject|reopen an existing hEIDI Project]] | ||
| - | * [[deleteContext|delete a context]] | + | * [[deleteContext|delete context(s)]] |
| * [[fillIdentInfo|get Sample/Run informations from ePims]] | * [[fillIdentInfo|get Sample/Run informations from ePims]] | ||
| ===== Visualization ===== | ===== Visualization ===== | ||
| - | * [[browseContextProtGroups|browse context's protein groups]] | + | * [[browseContextProtGroups|Browse all context's protein groups]] |
| * [[peptideView|visualize all context's peptides]] | * [[peptideView|visualize all context's peptides]] | ||
| * [[viewProtgroups|visualize protein groups ]] information details | * [[viewProtgroups|visualize protein groups ]] information details | ||
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| * [[editIdentificationInfos|view and edit identification informations (general information ans run/sample)]] | * [[editIdentificationInfos|view and edit identification informations (general information ans run/sample)]] | ||
| * [[accessspectralcountdata|run and/or view spectral count data]] | * [[accessspectralcountdata|run and/or view spectral count data]] | ||
| + | * :!: **New** [[accessadjustedspectralcountdata|run and/or view adjusted spectral count data]] | ||
| * [[accessProperties|access object properties, show/hide columns in a tree view, filter columns in a tree view]] | * [[accessProperties|access object properties, show/hide columns in a tree view, filter columns in a tree view]] | ||
| - | ===== Save and export ===== | + | ===== Save, import and export ===== |
| * [[exportContext|export identified proteins & peptides from a context]] | * [[exportContext|export identified proteins & peptides from a context]] | ||
| * [[exportComparison|export a comparison result]] | * [[exportComparison|export a comparison result]] | ||
| * [[saveComparison|save/load a comparison result]] | * [[saveComparison|save/load a comparison result]] | ||
| - | * [[generateAMTdb|generate a new AMT database from a context]] | + | * [[saveToMSIdb|save modifications back to the MSIdb]] |
| - | * [[saveToMSIdb|save modifications back to the MSIdb]] | + | |
| * [[exportSqlResult|export an SQL result to a file]] | * [[exportSqlResult|export an SQL result to a file]] | ||
| - | * [[includeUmcInAmtDb|include UMCs in AMTdb]] | + | * [[spectrumMatchFeeder|populate MSI database with spectra]] |
| - | * [[exportPride|export context to PRIDE XML format]] | + | * [[generateAMTdb|[AMT] generate a new AMT database from a context]] |
| + | * <del>[[includeUmcInAmtDb|[AMT] include UMCs in AMTdb]]</del> (see Import UMCs into MSIdb) | ||
| + | * [[exportPride|[PRIDE] export context to PRIDE XML format]] | ||
| + | * [[exportPrideLog|[PRIDE] view PRIDE log]] | ||
| + | * [[exportAdHocExport|[Ad-hoc export] on-demand exports]] | ||
| + | * [[exportadhocexport_ppmswleaves|[Ad-hoc export] export Protein Groups, Peptides and Leaves]] | ||
| + | * [[exportAdHocExport_N15|[Ad-hoc export, N15] export 15N data]] | ||
| + | * [[importUmcToMsiDb|[AMT] Import UMCs into MSIdb]] | ||
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| * [[proteinFiltering|filter proteins or protein groups]] | * [[proteinFiltering|filter proteins or protein groups]] | ||
| * [[resetProteinFiltering|reset protein/protein group filter]] | * [[resetProteinFiltering|reset protein/protein group filter]] | ||
| - | * [[compareMultiContexts|compare multiple contexts]] | + | * [[compareMultiContexts|compare several contexts]] |
| * [[compareContextWithExtAccession|compare a context with an external accession list]] | * [[compareContextWithExtAccession|compare a context with an external accession list]] | ||
| * [[accessspectralcountdata|run and/or view spectral count data]] | * [[accessspectralcountdata|run and/or view spectral count data]] | ||
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| * [[writeSqlQueries|write SQL Queries to explore database]] | * [[writeSqlQueries|write SQL Queries to explore database]] | ||
| * [[changeTypicalProtein|change typical protein]] | * [[changeTypicalProtein|change typical protein]] | ||
| - | * [[alignRetentionTime|align retention time]] | + | * [[alignRetentionTime|[AMT] align retention time]] |
| - | * [[recomputeRetentionTime|recompute retention time]] | + | * [[recomputeRetentionTime|[AMT] recompute retention time]] |
| + | * [[batchProcessing| make batch processing]] | ||
| + | * [[computeFalsePositiveRate|Compute False Positive Rate]] | ||
how_to/start.1296555172.txt.gz · Last modified: 2011/02/01 11:12 by 132.168.74.230
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