how_to:exportcontext
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how_to:exportcontext [2011/12/05 18:33] (current) 132.168.73.124 |
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| * Click on the menu ''MS Identification > Context > Export > Reports'' | * Click on the menu ''MS Identification > Context > Export > Reports'' | ||
| * Select one of the five reports from the droplist (in the First Step Panel of the Assistant): | * Select one of the five reports from the droplist (in the First Step Panel of the Assistant): | ||
| - | * **Protein groups summary**: reports the complete list of protein groups and give predefined properties for each group | + | * **Protein groups summary**: reports the complete list of protein groups and give predefined properties for each group |
| - | * **Protein groups details**: reports a detailled description of all protein groups contained in the selected context | + | * **Protein groups details**: reports a detailled description of all protein groups contained in the selected context |
| - | * **Same Subset details**: reports a detailled description of all sameset proteins and subset proteins for each protein group | + | * **Same Subset details**: reports a detailled description of all sameset proteins and subset proteins for each protein group |
| - | * **Peptide details**: reports a detailled description of all peptides | + | * **Peptide details**: reports a detailled description of all peptides |
| - | * **Context customizable summary**: reports the complete list of protein groups specifying which properties to display | + | * **Context customizable summary**: reports the complete list of protein groups specifying which properties to display |
| * Click ''Next'' | * Click ''Next'' | ||
| * If you selected the "Context customizable summary" report, you have to fill in the second step panel "Customize Report" (see next section below for details). Click ''Next''. | * If you selected the "Context customizable summary" report, you have to fill in the second step panel "Customize Report" (see next section below for details). Click ''Next''. | ||
| - | * In the last panel "Generate Output", select your output format (.xls, .pdf or .html) and your destination filepath. | + | * In the last panel "Generate Output", select your output format (.xls, .pdf or .html) and your destination file. |
| {{ :how_to:exportcontext.png |}} | {{ :how_to:exportcontext.png |}} | ||
| - | ===== Details about "Context customizable summary (Protein Groups)" Report ===== | + | ===== "Protein groups summary" Report ===== |
| - | For this report, a second step is necessary to select the properties to display in the final report.\\ | + | {{ :how_to:exportcontextsumarizeresult.png |}} |
| - | The available property list may include user generated properties such as spectral count. \\ | + | |
| - | {{ :how_to:exportcontextcustom.png |}} | ||
| + | ===== "Protein groups details" Report ===== | ||
| - | ===== Export result ===== | + | This report displays the same information as the "protein groups summary" report but also displays, for each group, the list of identified peptides. |
| - | === Protein groups summary / Customizable export === | + | {{ :how_to:exportcontextdetailresult.png |}} |
| - | The protein groups summary export will generate a file containing following informations | + | ===== "Same Subset details" Report ===== |
| - | {{ :how_to:exportcontextsumarizeresult.png |}} | + | {{ :how_to:exportsamesubsetdetailsreport.png |}} |
| - | If **customizable summary** report has been chosen only the selected parameter will be displayed in the protein groups table. | + | ===== "Peptide details" Report ===== |
| - | === Protein groups details === | + | All PTMs are in one cell (use Tools->Text to columns and specifiy ';' as a separator to put one PTM per cell).\\ |
| + | All proteins are in one cell (use Tools->Text to columns and specifiy ';' as a separator to put one protein per cell).\\ | ||
| + | |||
| + | {{:how_to:exportpeptidedetailsreport.png|}} | ||
| - | The protein groups details report export the same information than protein groups summary export but also display for each group the list of peptide that has been used for identification. | + | ===== "Context customizable summary (Protein Groups)" Report ===== |
| - | {{ :how_to:exportcontextdetailresult.png |}} | + | For this report, a second step is necessary to select the properties to display in the final report.\\ |
| + | The available property list may include user generated properties such as spectral count. \\ | ||
| + | |||
| + | {{ :how_to:exportcontextcustom.png |}} | ||
how_to/exportcontext.1280827793.txt.gz · Last modified: 2010/08/03 11:29 by 132.168.74.230
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