how_to:exportcontext
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
how_to:exportcontext [2010/08/03 11:18] 132.168.74.230 |
how_to:exportcontext [2011/12/05 18:33] (current) 132.168.73.124 |
||
|---|---|---|---|
| Line 3: | Line 3: | ||
| ===== How to access this feature ===== | ===== How to access this feature ===== | ||
| - | - Select the context of your choice (for a User context, protein grouping should have been executed) in the MSI Explorer window | + | * Select the context of your choice (for a User context, protein grouping should have been executed) in the MSI Explorer window |
| - | - Click on the menu ''MS Identification > Context > Export > Reports'' | + | * Click on the menu ''MS Identification > Context > Export > Reports'' |
| - | - Select one of the five reports from the droplist (in the First Step Panel of the Assistant): | + | * Select one of the five reports from the droplist (in the First Step Panel of the Assistant): |
| - | * **Protein groups summary**: reports the complete list of protein groups and give predefined properties for each group | + | * **Protein groups summary**: reports the complete list of protein groups and give predefined properties for each group |
| - | * **Protein groups details**: reports a detailled description of all protein groups contained in the selected context | + | * **Protein groups details**: reports a detailled description of all protein groups contained in the selected context |
| - | * **Same Subset details**: reports a detailled description of all sameset proteins and subset proteins for each protein group | + | * **Same Subset details**: reports a detailled description of all sameset proteins and subset proteins for each protein group |
| - | * **Peptide details**: reports a detailled description of all peptides | + | * **Peptide details**: reports a detailled description of all peptides |
| - | * **Context customizable summary**: reports the complete list of protein groups specifying which properties to display | + | * **Context customizable summary**: reports the complete list of protein groups specifying which properties to display |
| - | - Click ''Next'' | + | * Click ''Next'' |
| - | - If you selected the "Context customizable summary" report, you have to fill in the second step panel "Customize Report" (see next section below for details). Click ''Next''. | + | * If you selected the "Context customizable summary" report, you have to fill in the second step panel "Customize Report" (see next section below for details). Click ''Next''. |
| - | - In the last panel "Generate Output", select your output format (.xls, .pdf or .html) and your destination filepath. | + | * In the last panel "Generate Output", select your output format (.xls, .pdf or .html) and your destination file. |
| {{ :how_to:exportcontext.png |}} | {{ :how_to:exportcontext.png |}} | ||
| - | ===== Details about "Context customizable summary (Protein Groups)" Report ===== | + | ===== "Protein groups summary" Report ===== |
| - | For **customizable report**, an other step is necessary in order to choose which properties will be visible and which labels will be displayed. The available property list may include user generated properties such as spectral count. \\ | + | {{ :how_to:exportcontextsumarizeresult.png |}} |
| - | {{ :how_to:exportcontextcustom.png |}} | ||
| + | ===== "Protein groups details" Report ===== | ||
| - | ===== Export result ===== | + | This report displays the same information as the "protein groups summary" report but also displays, for each group, the list of identified peptides. |
| - | === Protein groups summary / Customizable export === | + | {{ :how_to:exportcontextdetailresult.png |}} |
| - | The protein groups summary export will generate a file containing following informations | + | ===== "Same Subset details" Report ===== |
| - | {{ :how_to:exportcontextsumarizeresult.png |}} | + | {{ :how_to:exportsamesubsetdetailsreport.png |}} |
| - | If **customizable summary** report has been chosen only the selected parameter will be displayed in the protein groups table. | + | ===== "Peptide details" Report ===== |
| - | === Protein groups details === | + | All PTMs are in one cell (use Tools->Text to columns and specifiy ';' as a separator to put one PTM per cell).\\ |
| + | All proteins are in one cell (use Tools->Text to columns and specifiy ';' as a separator to put one protein per cell).\\ | ||
| + | |||
| + | {{:how_to:exportpeptidedetailsreport.png|}} | ||
| - | The protein groups details report export the same information than protein groups summary export but also display for each group the list of peptide that has been used for identification. | + | ===== "Context customizable summary (Protein Groups)" Report ===== |
| - | {{ :how_to:exportcontextdetailresult.png |}} | + | For this report, a second step is necessary to select the properties to display in the final report.\\ |
| + | The available property list may include user generated properties such as spectral count. \\ | ||
| + | |||
| + | {{ :how_to:exportcontextcustom.png |}} | ||
how_to/exportcontext.1280827093.txt.gz · Last modified: 2010/08/03 11:18 by 132.168.74.230
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
