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how_to:alignretentiontime [2010/07/30 14:31] 132.168.74.230 |
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{{ :how_to:rtalignmentmenu.png |Retention Time Alignment menu}} | {{ :how_to:rtalignmentmenu.png |Retention Time Alignment menu}} | ||
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+ | :!: **Required condition to run the Retention Time Alignment algorithm:** | ||
+ | |||
+ | * **Selected User context must be grouped** | ||
+ | |||
+ | If above condition is respected, then follow these steps: | ||
- Select the User context you want to align (You first need to [[how_to:proteingrouping|group proteins]] for this context and [[how_to:savetomsidb|save]] it) | - Select the User context you want to align (You first need to [[how_to:proteingrouping|group proteins]] for this context and [[how_to:savetomsidb|save]] it) | ||
- | - Go to the ''MS Identifications->Context->Algorithms->Retention Time Alignment'' to display settings dialog | + | - To display the settings dialog: |
+ | * Right-click on the selected context and select ''Algorithms->Retention Time->Retention Time Alignment'' | ||
+ | * Or, from the main toolbar, select ''MS Identifications->Context->Algorithms->Retention Time->Retention Time Alignment'' | ||
- Change algo settings options (see below) if needed and click the ''Ok'' button | - Change algo settings options (see below) if needed and click the ''Ok'' button | ||
{{ :how_to:rtalignmentgui.png|Retention Time Alignment settings}} | {{ :how_to:rtalignmentgui.png|Retention Time Alignment settings}} | ||
- | ==== Algo settings options ==== | + | ==== Algo settings options (The default options are generally optimal) ==== |
On top of the dialog, are displayed the following information: | On top of the dialog, are displayed the following information: |