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how_to:accessspectralcountdata [2010/01/12 07:54] 132.168.73.247 |
how_to:accessspectralcountdata [2012/02/29 12:24] 132.168.73.124 |
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- | ====== How to access spectral count data ====== | + | ====== How to run and access spectral count data ====== |
+ | |||
+ | :!: Since hEIDI 1.13.0, spectral count has been tuned. To achieve this, the new field ''leaves_match_count'' in MSIdb has been created in the peptide_instance table. | ||
===== Run the Spectral Count algorithm ===== | ===== Run the Spectral Count algorithm ===== | ||
Spectral Count algorithm should have been run at least once : | Spectral Count algorithm should have been run at least once : | ||
- | - Select the context of your choice (for which protein grouping have been executed) | + | - Select one or more context of your choice (for which protein grouping have been executed) |
- Right-click and select ''Algorithms > Compute Spectral Count'' | - Right-click and select ''Algorithms > Compute Spectral Count'' | ||
- Check/Uncheck optional parameters to compute. Then ''OK''. | - Check/Uncheck optional parameters to compute. Then ''OK''. | ||
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===== View spectral count data ===== | ===== View spectral count data ===== | ||
- | When Spectral Count algorithm execution is finished, you can retrieve results in: | + | When Spectral Count algorithm execution is finished, you can retrieve results and parameters used in: |
* [[accessproperties|properties]] of every Protein Groups in that context | * [[accessproperties|properties]] of every Protein Groups in that context | ||
{{:spectralcountresultpropertysheet.png| Protein Group properties}} | {{:spectralcountresultpropertysheet.png| Protein Group properties}} |