firststeps
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| - | ===== Connecting ===== | + | * First of all you need to [[how_to:dbconnection|get a connection on the MSI db]] (Mass Spectrometer Identification database)\\ |
| - | + | * The next step is to [[how to:createProject|create an hEIDI project]]\\ | |
| - | First of all, we need to get a connection on a Mass Spectrometer Identification database (MSI db). | + | * Then you are ready to [[how_to:opensession|open a working session on the MSI db]]\\ |
| - | In the Service window, select the database server hosting the MSI DB and enter connection properties in approprated field. | + | * At this stage, hEIDI opens two new tabs (windows) |
| - | + | * the identifications tab contains all the identification results of the selected MSIdb | |
| - | {{:connect.png|}} | + | * the other tab contains all user and mascot [[.:userguide:contextdefinition|contexts]]. Context is a central notion in hEIDI. Basically, it contains identification results |
| - | + | * You can [[.:how_to:browsecontextprotgroups|browse the content]] of a context. | |
| - | **Connection to a postgres server** | + | |
| - | + | To go further read other sections of the [[.:start:|documentation]] | |
| - | ===== hEIDI Projects ===== | + | |
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| - | It is possible to create hEIDI projects in order to organise data. For now, data consist of SQL queries... | + | |
| - | To create a Project, click right in the ''Project'' window or choose ''File > New Project'' menu and only specify the project name in the wizard. | + | |
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| - | ===== SQL Queries ===== | + | |
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| - | Once the connection is successful, the first simple feature is to explore the database or create SQL queries. Information on MSI database and its model is available [[http://biodev.extra.cea.fr/docs/irma/doku.php?id=msidb| here ]]. | + | |
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| - | You can create new SQL files from hEIDI project (''File > New File'' menu then choose ''Empty File'' or directly ''New Empty File'' from hEIDI Project window) . It is also possible to select a Table under database connection and choose ''Veiw Data''. | + | |
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| - | {{:sql_comment.png|}} | + | |
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| - | ** SQL queries sample ** | + | |
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| - | ===== Open MSI Session ===== | + | |
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| - | To open a working session on the MS identification database, select the connection in ''Service Window'' and open menu ''MS Identification > Open session''. | + | |
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firststeps.txt · Last modified: 2010/01/05 15:40 by 132.168.73.247
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