Table of Contents
How to run and access spectral count data
Since hEIDI 1.13.0, spectral count has been tuned. To achieve this, the new field leaves_match_count in MSIdb has been created in the peptide_instance table. For this reason, an MSIdb migration has to be realized to add & populate this field if you intend to use the hEIDI 1.13.0 version.
Run the Spectral Count algorithm
Spectral Count algorithm should have been run at least once :
- Select one or more context of your choice (for which protein grouping have been executed)
- Right-click and select
Algorithms > Compute Spectral Count - Check/Uncheck optional parameters to compute. Then
OK.
View spectral count data
When Spectral Count algorithm execution is finished, you can retrieve results and parameters used in:
- properties of every Protein Groups in that context
- the context's protein groups list
