releasenotes
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releasenotes [2012/03/01 08:57] 132.168.73.124 |
releasenotes [2013/03/26 08:14] (current) 132.168.72.131 |
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| Full release note with fixes issues is available on project management web application (using RedMine). | Full release note with fixes issues is available on project management web application (using RedMine). | ||
| + | ===== hEIDI 1.14.3 ===== | ||
| + | Released on 26/MAR/2013 | ||
| + | Bug fix : Distribution problem. hEIDI distribution without embedded JRE is now OK. | ||
| + | |||
| + | ===== hEIDI 1.14.1 ===== | ||
| + | |||
| + | Released on 25/JAN/2013 | ||
| + | |||
| + | * Add Context ID in the property sheet (needed for imoprting spctrum using Paloma) | ||
| + | * Change advanced spectral count output to allow better copy/paste into Excel | ||
| + | |||
| + | |||
| + | ===== hEIDI 1.14.0 ===== | ||
| + | |||
| + | Released on 15/JAN/2013 | ||
| + | |||
| + | **hEIDI 1.14.0 is based on MSIdb E.2** | ||
| + | |||
| + | * Algorithms | ||
| + | * Adjusted Spectral count : Add new spectral count Algorithm which calculate peptides SC weight on a parent context before calculating SC on child context. | ||
| + | * Bugs Fixes : | ||
| + | * Pride export on context with small name | ||
| + | * AMT db export with peptide sequence greater than 50 | ||
| + | |||
| + | | ||
| ===== hEIDI 1.13.0 ===== | ===== hEIDI 1.13.0 ===== | ||
| Released on 29/FEB/2012 | Released on 29/FEB/2012 | ||
| - | **hEIDI 1.13.0 is based on MSIdb E.1** | + | **hEIDI 1.13.0 is based on MSIdb E.2** |
| * Algorithms | * Algorithms | ||
| Line 20: | Line 45: | ||
| * A dialog message has been added to confirm the MSIdb is saved before launching the comparison algorithm | * A dialog message has been added to confirm the MSIdb is saved before launching the comparison algorithm | ||
| * The contents of the context comparison result table can be quickly saved to a .csv file. | * The contents of the context comparison result table can be quickly saved to a .csv file. | ||
| - | * Spectral count | + | * Spectral count |
| - | * Spectral count algorithm has been tuned and is really faster. To achieve this, MSIdb E.1 model has slightly changed (new peptide_leaves_count field in peptide_match table) | + | * Spectral count algorithm has been tuned and is really faster. To achieve this, MSIdb E.1 model has slightly changed (new peptide_leaves_count field in peptide_match table) |
| - | * Spectral count on non-grouped context can not be run | + | * Spectral count on non-grouped context can not be run |
| - | * False Positive Rate | + | * False Positive Rate |
| - | * False Positive Rate (in percentage) can be computed for a given User context and saved as a property. Formula used is: FPR=FP/(TP+FP) with FP=(2*reverse) and TP=(reverse+forward)-FP. The "significant.and.duplicated.fp" & "significant.and.duplicated.tp" properties are extracted from leave identifications falling under the given User context. If at least one of these properties is equal to zero, the concerned identification(s) is(are) not taken into account in the FPR calculation and user is informed) | + | * False Positive Rate (in percentage) can be computed for a given User context and saved as a property. Formula used is: FPR=FP/(TP+FP) with FP=(2*reverse) and TP=(reverse+forward)-FP. The "significant.and.duplicated.fp" & "significant.and.duplicated.tp" properties are extracted from leave identifications falling under the given User context. If at least one of these properties is equal to zero, the concerned identification(s) is(are) not taken into account in the FPR calculation and user is informed) |
| - | * Batch | + | * Batch |
| - | * Some algorithms can now be run in batch for multiple contexts: peptide/protein grouping, filtering, spectral counting | + | * Some algorithms can now be run in batch for multiple contexts: peptide/protein grouping, filtering, spectral counting |
| - | * AMT | + | * AMT |
| - | * UMCs to MSIdb | + | * UMCs to MSIdb |
| - | * A new wizard is available to import multiple UMCs result files (i.e. conglomerate files) into MSIdb. Each conglomerate file (i.e. each file containing UMCs) will result in a new Quanti context. Quanti context name is built from conglomerate filename and sample name (if found from ePims WebService) . A Quanti context contains identified/quantified peptides; the new peptide property "max abu" gives the maximum abundance for this peptide | + | * A new wizard is available to import multiple UMCs result files (i.e. conglomerate files) into MSIdb. Each conglomerate file (i.e. each file containing UMCs) will result in a new Quanti context. Quanti context name is built from conglomerate filename and sample name (if found from ePims WebService) . A Quanti context contains identified/quantified peptides; the new peptide property "max abu" gives the maximum abundance for this peptide |
| - | * AMTdb export enhancement (how-to) | + | * AMTdb export enhancement (how-to) |
| - | * Before exporting a context to an AMTdb, user is asked for analysis duration and delay. These 2 information, used to compute NET values, are stored in AMTdb (so AMT database model has slightly changed) | + | * Before exporting a context to an AMTdb, user is asked for analysis duration and delay. These 2 information, used to compute NET values, are stored in AMTdb (so AMT database model has slightly changed) |
| - | * Peptide view (how-to) | + | * Peptide view |
| - | * The m/z, delta m/z and retention time of the best child peptide are used when creating a new grouped peptide (#3857) ATTENTION: ceci est effectif pour les nouveaux grouping seulement ! Les anciens peptides groupés conservent leurs valeurs | + | * The m/z, delta m/z and retention time of the best child peptide are used when creating a new grouped peptide (ATTENTION: effective for the new grouping only! |
| - | * Export (how-to, concept) | + | * Export (how-to, concept) |
| - | * In the "Protein groups with peptides & leaves" custom export (#3967): | + | * In the "Protein groups with peptides & leaves" custom export: |
| - | * 2 new fields have been added: charge & score for leave peptides | + | * 2 new fields have been added: charge & score for leave peptides |
| - | * export is customizable (user defines column visibility) | + | * export is customizable (user defines column visibility) |
releasenotes.1330588650.txt.gz · Last modified: 2012/03/01 08:57 by 132.168.73.124
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