how_to:exportpride
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
how_to:exportpride [2013/01/21 09:45] 132.168.72.131 |
how_to:exportpride [2013/01/28 08:05] (current) 132.168.72.131 |
||
|---|---|---|---|
| Line 3: | Line 3: | ||
| **Warning:** | **Warning:** | ||
| * :!: **Exporting a UserContext to PRIDE XML format is only available for [[http://biodev.extra.cea.fr/docs/irma/doku.php?id=msidb|MSIdb]] version D.4 (or later versions).** | * :!: **Exporting a UserContext to PRIDE XML format is only available for [[http://biodev.extra.cea.fr/docs/irma/doku.php?id=msidb|MSIdb]] version D.4 (or later versions).** | ||
| - | * :!: **In hEIDI versions v1.10.1, v1.11.0, v1.11.1 & v1.12.0 (MSIdb E.1), the ''header'' of the generated PRIDE XML file is not totally achieved** (contact info, experiment & sample details, protocol steps, etc.). **The user will have to use PRIDE Converter to build another PRIDE XML file, from which he will only copy the meta-infos and paste them into the hEIDI generated PRIDE XML file.** | + | * :!: **In hEIDI versions v1.10.1, v1.11.0 and up to now (MSIdb E.1), the ''header'' of the generated PRIDE XML file is not totally achieved** (contact info, experiment & sample details, protocol steps, etc.). **The user will have to use PRIDE Converter to build another PRIDE XML file, from which he will only copy the meta-infos and paste them into the hEIDI generated PRIDE XML file.** |
| **Note:** | **Note:** | ||
| Line 11: | Line 11: | ||
| ===== Main steps to export a UserContext to PRIDE XML format ===== | ===== Main steps to export a UserContext to PRIDE XML format ===== | ||
| - | |||
| - | |||
| - | - Import spectra into MSIdb ( :!: ** Ask the team info** See [[how_to:spectrummatchfeeder|populate MSIdb with spectrum feature]]) | ||
| - **From a UserContext in hEIDI**, launch the PRIDE XML Export to create a first PRIDE XML file (see details below) | - **From a UserContext in hEIDI**, launch the PRIDE XML Export to create a first PRIDE XML file (see details below) | ||
| + | - If necessary, a dialog will appear (see below), [[how_to:spectrummatchfeeder|import spectra into MSIdb]]. | ||
| - **From the PRIDE Converter wizard**, create a second PRIDE XML file (see **[[userguide:pride_converter|here]]**) | - **From the PRIDE Converter wizard**, create a second PRIDE XML file (see **[[userguide:pride_converter|here]]**) | ||
| - **Copy the ''header'' from the second PRIDE XML file and paste it into the first PRIDE XML file** (see below) | - **Copy the ''header'' from the second PRIDE XML file and paste it into the first PRIDE XML file** (see below) | ||
| Line 72: | Line 70: | ||
| ===== 4. Check your PRIDE XML file using PRIDE Inspector ===== | ===== 4. Check your PRIDE XML file using PRIDE Inspector ===== | ||
| - | |||
how_to/exportpride.1358757947.txt.gz · Last modified: 2013/01/21 09:45 by 132.168.72.131
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
