Differences

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--- how_to:alignretentiontime [2010/07/30 14:31]
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+++ how_to:alignretentiontime [2010/08/04 12:11] (current)
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@@ Line 6: / Line 6: @@
 {{ :how_to:rtalignmentmenu.png |Retention Time Alignment menu}}
+:!: **Required condition to run the Retention Time Alignment algorithm:**
+  * **Selected User context must be grouped**
+If above condition is respected, then follow these steps:
   - Select the User context you want to align (You first need to [[how_to:proteingrouping|group proteins]] for this context and [[how_to:savetomsidb|save]] it)
-  - Go to the ''MS Identifications->Context->Algorithms->Retention Time Alignment'' to display settings dialog
+  - To display the settings dialog:
+    * Right-click on the selected context and select ''Algorithms->Retention Time->Retention Time Alignment''
+    * Or, from the main toolbar, select ''MS Identifications->Context->Algorithms->Retention Time->Retention Time Alignment''
   - Change algo settings options (see below) if needed and click the ''Ok'' button
 {{ :how_to:rtalignmentgui.png|Retention Time Alignment settings}}
-==== Algo settings options ====
+==== Algo settings options (The default options are generally optimal) ====
 On top of the dialog, are displayed the following information:

hEIDI