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====== hEIDI User Guide ====== | ====== hEIDI User Guide ====== | ||
- | ===== Introduction ===== | ||
- | FIXME (TODO) Introduction : IRMA - MSI - hEIDI | ||
- | + | ===== Concepts ===== | |
- | + | ||
- | hEIDI principles : gros grains et objectif générals | + | |
- | + | ||
- | ===== Features ===== | + | |
* [[hEIDIProject|hEIDI Project]] | * [[hEIDIProject|hEIDI Project]] | ||
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* [[contextDefinition|Context definition]] | * [[contextDefinition|Context definition]] | ||
* [[proteinGroups|Protein groups and peptides]] | * [[proteinGroups|Protein groups and peptides]] | ||
+ | * [[identRunSample|Identifications, Runs and Samples]] | ||
+ | * [[properties|Properties]] | ||
+ | * [[PRIDE Export Properties]] | ||
+ | * [[PRIDE Converter]] | ||
* Operations definitions | * Operations definitions | ||
* [[peptidesAndProteinGrouping|Grouping peptides and proteins]] | * [[peptidesAndProteinGrouping|Grouping peptides and proteins]] | ||
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* [[contextComparisons|Contexts comparison]] | * [[contextComparisons|Contexts comparison]] | ||
* [[spectralCount|Spectral Count]] | * [[spectralCount|Spectral Count]] | ||
+ | * [[retentionTimeAlignment|Retention time alignment]] | ||
+ | * [[retentionTimeRecomputing|Retention time recomputing]] | ||
* [[graphicalPeptideView|Graphical peptides view (histograms, plots....)]] | * [[graphicalPeptideView|Graphical peptides view (histograms, plots....)]] | ||
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