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====== hEIDI User Guide ====== | ====== hEIDI User Guide ====== | ||
- | ===== Introduction ===== | ||
- | Introduction : IRMA - MSI - hEIDI | ||
- | Les principes d'hEIDI : gros grains et objectif générals | ||
- | ===== Features ===== | + | ===== Concepts ===== |
* [[hEIDIProject|hEIDI Project]] | * [[hEIDIProject|hEIDI Project]] | ||
- | * [[contextDefinition|Context definition]] | + | * Data concepts : |
- | * [[proteinGroups|Protein groups]] | + | * [[contextDefinition|Context definition]] |
- | * [[peptidesAndProteinGrouping|Grouping peptides and proteins]] | + | * [[proteinGroups|Protein groups and peptides]] |
- | * [[contextComparisons|Contexts comparison]] | + | * [[identRunSample|Identifications, Runs and Samples]] |
- | * Spectral Count | + | * [[properties|Properties]] |
- | * Graphical peptides view (histograms, plots....) | + | * [[PRIDE Export Properties]] |
- | + | * [[PRIDE Converter]] | |
- | + | * [[PRIDE Inspector]] | |
- | + | * Operations definitions | |
- | ** A DEPLACER** | + | * [[peptidesAndProteinGrouping|Grouping peptides and proteins]] |
- | + | * [[proteinFiltering|Filter proteins [groups] ]] | |
- | [[sqlQueries]] | + | * **Changed** :!: [[contextComparisons|Contexts comparison]] |
+ | * **Chnaged** :!: [[spectralCount|Spectral Count]] | ||
+ | * [[retentionTimeAlignment|Retention time alignment]] | ||
+ | * [[retentionTimeRecomputing|Retention time recomputing]] | ||
+ | * [[graphicalPeptideView|Graphical peptides view (histograms, plots....)]] | ||
+ | * **New** :!: [[falsePositiveRate|False Positive Rate]] | ||
+ | * **New** :!: [[umcToMsiDb|UMCs into MSIdb]] | ||
+ | |||