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userguide:pride_export_properties [2011/03/08 14:21] 132.168.74.230 |
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<Database>Sp_Trembl</Database> | <Database>Sp_Trembl</Database> | ||
</GelFreeIdentification> | </GelFreeIdentification> | ||
+ | ... | ||
</Experiment> | </Experiment> | ||
</ExperimentCollection> | </ExperimentCollection> | ||
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- | ===== Pride Controlled Vocabulary (CV) ===== | + | ===== PRIDE Controlled Vocabulary (CV) ===== |
+ | |||
+ | There are several CV, coming from several ontologies, used in a PRIDE XML file.\\ | ||
+ | You can find more details about CV on PRIDE website at [[http://www.ebi.ac.uk/pride/ontologyHelp.do|help for using CV]]. | ||
- | There is several CV used in PRIDE XML. You can find on PRIDE site a [[http://www.ebi.ac.uk/pride/ontologyHelp.do|help for using CV]]. | + | Here are some examples of Ontologies/CV: |
+ | * **Mass Spectroscopy CV (PSI-MS) [PSI]** [[http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PSI|Browse ontology]] | ||
+ | * **PRIDE Controlled Vocabulary [PRIDE]** [[http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PRIDE|Browse ontology]] | ||
+ | * **Protein Modifications (PSI-MOD) [MOD]** [[http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=MOD|Browse ontology]] | ||
==== PSI CV Ontology ==== | ==== PSI CV Ontology ==== |