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userguide:contextdefinition [2009/12/16 13:59] 132.168.74.230 |
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===== Definition ===== | ===== Definition ===== | ||
- | Context is a central notion in hEIDI. Basically, it contains identification results. A context contains a set of proteins identified by a set of peptides.\\ | + | Context is a central notion in hEIDI. Basically, it contains identification results, i.e. a set of proteins identified by a set of peptides.\\ |
There are two types of contexts in hEIDI: | There are two types of contexts in hEIDI: | ||
- | * Search context: each identification result from Mascot, or from any other identification engine, is "encapsulated" into a Search context. | + | * Search context: each identification result from Mascot, or from any other identification engine, is automatically "encapsulated" into one Search context. |
- | * User context: it is created by the user to gather together several identification results. In order to have non-redundant sets of proteins for a given context, protein grouping process need to be run. | + | * User context: it is created by the user in order to gather together several identification results into a User context. In order to have non-redundant sets of proteins for a given context, protein grouping process need to be run. |
===== GUI: Browse context tree view ===== | ===== GUI: Browse context tree view ===== | ||
==== User Context ==== | ==== User Context ==== | ||
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{{:usercontext.png|}} | {{:usercontext.png|}} |