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userguide:contextdefinition [2009/12/16 13:52] 132.168.74.230 |
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===== Definition ===== | ===== Definition ===== | ||
- | Context is a central notion in hEIDI. Basically, it contains identification results. A context is a set of proteins identified by a set of peptides.\\ | + | Context is a central notion in hEIDI. Basically, it contains identification results, i.e. a set of proteins identified by a set of peptides.\\ |
There are two types of contexts in hEIDI: | There are two types of contexts in hEIDI: | ||
- | * Search context: each identification result from Mascot, or from any other identification engine, is "encapsulated" into a Search context. | + | * Search context: each identification result from Mascot, or from any other identification engine, is automatically "encapsulated" into one Search context. |
- | * User context: it is created by the user to gather together several identification results. In order to have non redundant sets of proteins in a given context, protein grouping is run. | + | * User context: it is created by the user in order to gather together several identification results into a User context. In order to have non-redundant sets of proteins for a given context, protein grouping process need to be run. |
- | ===== GUI: Browse context ===== | + | ===== GUI: Browse context tree view ===== |
- | + | ==== User Context ==== | |
+ | |||
+ | {{:usercontext.png|}} | ||
+ | {{:usercontextshierarchy.png|}} | ||
+ | |||
+ | |||
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+ | ==== Search Context ==== | ||
+ | {{:context.png|}} | ||
+ | {{:searchcontextshierarchy.png|}} | ||
- | ===== GUI: display context details ===== | ||