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userguide:contextdefinition [2009/12/16 09:43] 132.168.74.230 |
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===== Definition ===== | ===== Definition ===== | ||
- | Context is a central notion in hEIDI. Basically, it contains identification results grouped in a set of proteins identified by a set of peptides. There are two types of contexts in hEIDI: | + | Context is a central notion in hEIDI. Basically, it contains identification results. A context contains a set of proteins identified by a set of peptides.\\ |
- | * Search context: a Mascot identification result - or an identification result from any other identification engine - is encapsulated in a Search context | + | There are two types of contexts in hEIDI: |
- | * User context: | + | * Search context: each identification result from Mascot, or from any other identification engine, is "encapsulated" into a Search context. |
+ | * User context: it is created by the user to gather together several identification results. In order to have non-redundant sets of proteins for a given context, protein grouping process need to be run. | ||
- | ===== GUI: Browse context ===== | + | |
- | + | ===== GUI: Browse context tree view ===== | |
+ | ==== User Context ==== | ||
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+ | {{:usercontext.png|}} | ||
+ | {{:usercontextshierarchy.png|}} | ||
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+ | ==== Search Context ==== | ||
+ | {{:context.png|}} | ||
+ | {{:searchcontextshierarchy.png|}} | ||
- | ===== GUI: display context details ===== | ||