userguide:contextcomparisons
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userguide:contextcomparisons [2012/02/28 09:59] 132.168.73.124 |
userguide:contextcomparisons [2012/02/28 10:09] 132.168.73.124 |
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| ===== Details about comparison results ===== | ===== Details about comparison results ===== | ||
| - | When the comparison algorithm execution has finished, a window displays on the screen.\\ | + | When the comparison algorithm execution is finished, the comparison result is displayed in a tab.\\ |
| - | The most left column ("Union reference") displays protein groups (master protein accession) from the (virtual) union parent context.\\ | + | The most left column ("Union reference") displays the reference protein groups (master protein accession) from the union parent context (it may be a virtual context).\\ |
| For each protein group of the Union Reference context, the table displays the most "similar" protein group in each compared contexts.\\ | For each protein group of the Union Reference context, the table displays the most "similar" protein group in each compared contexts.\\ | ||
| For each compared context a default set of properties are displayed. You can change them by selecting/deselecting items in the droplist (right side). | For each compared context a default set of properties are displayed. You can change them by selecting/deselecting items in the droplist (right side). | ||
| {{:userguide:comparevirtualconcept_3.png|}} | {{:userguide:comparevirtualconcept_3.png|}} | ||
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| __**Protein group properties**__: | __**Protein group properties**__: | ||
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| * "isSameTypical": indicates if the **typical protein is the same** between the two protein groups | * "isSameTypical": indicates if the **typical protein is the same** between the two protein groups | ||
| * "Typical": the **accession of the master** protein group | * "Typical": the **accession of the master** protein group | ||
| + | * "refLoc": possible values are [TYPICAL], [SAMESET], [SUBSET] or []. This indicates where the reference protein accession is seen in the compared protein group. | ||
| + | * [TYPICAL] means the reference accession is seen in the compared protein group as the typical protein | ||
| + | * [SAMESET] means the reference accession is seen in the compared protein group as a sameset protein | ||
| + | * [SUBSET] means the reference accession is seen in the compared protein group as a subset protein | ||
| + | * [] means the reference accession is not seen in the compared protein group | ||
| + | * "refSC": | ||
| + | * "refSpeSC" | ||
| * "Score": **score** for the protein group | * "Score": **score** for the protein group | ||
| * "#Pep": **number of peptides** for the protein group | * "#Pep": **number of peptides** for the protein group | ||
userguide/contextcomparisons.txt · Last modified: 2012/02/28 11:18 by 132.168.73.124
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