how_to:generateamtdb
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how_to:generateamtdb [2012/02/29 12:03] 132.168.73.124 |
how_to:generateamtdb [2012/02/29 12:08] 132.168.73.124 |
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| :!: **Requirements** \\ | :!: **Requirements** \\ | ||
| - | Context have to be **[[how_to:proteingrouping|grouped]]** previously. | + | * Context have to be **[[how_to:proteingrouping|grouped]]** previously. You generally apply some filtering during and/or after the protein grouping step to suppress: |
| - | You generally apply some filtering during and/or after the protein grouping step to suppress: | + | * Reverse proteins |
| - | * Reverse proteins | + | * Species with a sequence < 7 |
| - | * Species with a sequence < 7 | + | * Proteins identified by only 1 species with a score < 60 |
| - | * Proteins identified by only 1 species with a score < 60 | + | * **[[how_to:alignretentiontime|Retention time alignment]]** & **[[how_to:recomputeretentiontime|retention time recomputing]]** algorithms may have to be run before creating |
| - | + | * Save your MSIdb | |
| - | :!: **Note**: **[[how_to:alignretentiontime|Retention time alignment]]** & **[[how_to:recomputeretentiontime|retention time recomputing]]** algorithms may have to be run before creating | + | \\ |
| - | + | \\ | |
| - | + | \\ | |
| - | + | To generate a new AMT database in the MS Access format (.mdb file) from a given User context, follow these steps: | |
| - | To generate a new AMT database in the MS Access format (.mdf file) from a given User context, follow these steps: | + | |
| {{ :amtexport_menu.png|Export a context to a new AMT database}} | {{ :amtexport_menu.png|Export a context to a new AMT database}} | ||
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| :!: **Notes**: | :!: **Notes**: | ||
| * UMCs tables were populated using '[[how_to:includeumcinamtdb|Read UMCs]]' tool until hEIDI 1.12.0.\\ | * UMCs tables were populated using '[[how_to:includeumcinamtdb|Read UMCs]]' tool until hEIDI 1.12.0.\\ | ||
| - | * Since hEIDI 1.13.0, UMCs result files are included into MSIdb (instead of AMTdb) | + | * Since hEIDI 1.13.0, [[how_to:importumctomsidb|UMCs result files are included into MSIdb]] (instead of AMTdb) |
| {{:how_to:amtexport_relationsmsaccess.png|Relationships in the AMT database (MS Access)}} | {{:how_to:amtexport_relationsmsaccess.png|Relationships in the AMT database (MS Access)}} | ||
how_to/generateamtdb.txt · Last modified: 2012/02/29 12:30 by 132.168.73.124
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