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how_to:generateamtdb [2012/02/29 12:01] 132.168.73.124 |
how_to:generateamtdb [2012/02/29 12:06] 132.168.73.124 |
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:!: **Requirements** \\ | :!: **Requirements** \\ | ||
- | Context have to be **[[how_to:proteingrouping|grouped]]** previously. | + | * Context have to be **[[how_to:proteingrouping|grouped]]** previously. You generally apply some filtering during and/or after the protein grouping step to suppress: |
- | You may want apply some filters during this step: | + | * Reverse proteins |
- | * Reverse proteins | + | * Species with a sequence < 7 |
- | * Species with a sequence < 7 | + | * Proteins identified by only 1 species with a score < 60 |
- | * Proteins identified by only 1 species with a score < 60 | + | * **[[how_to:alignretentiontime|Retention time alignment]]** & **[[how_to:recomputeretentiontime|retention time recomputing]]** algorithms may have to be run before creating |
+ | * Save your MSIdb | ||
- | :!: **Notes** \\ | + | To generate a new AMT database in the MS Access format (.mdb file) from a given User context, follow these steps: |
- | **[[how_to:alignretentiontime|Retention time alignment]]** & **[[how_to:recomputeretentiontime|retention time recomputing]]** algorithms may have to be run before creating | + | |
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- | To generate a new AMT database in the MS Access format (.mdf file) from a given User context, follow these steps: | + | |
{{ :amtexport_menu.png|Export a context to a new AMT database}} | {{ :amtexport_menu.png|Export a context to a new AMT database}} |