how_to:generateamtdb
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how_to:generateamtdb [2012/02/29 12:01] 132.168.73.124 |
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| :!: **Requirements** \\ | :!: **Requirements** \\ | ||
| Context have to be **[[how_to:proteingrouping|grouped]]** previously. | Context have to be **[[how_to:proteingrouping|grouped]]** previously. | ||
| - | You may want apply some filters during this step: | + | You generally apply some filtering during and/or after the protein grouping step to suppress: |
| * Reverse proteins | * Reverse proteins | ||
| * Species with a sequence < 7 | * Species with a sequence < 7 | ||
| * Proteins identified by only 1 species with a score < 60 | * Proteins identified by only 1 species with a score < 60 | ||
| - | :!: **Notes** \\ | + | :!: **Note**: **[[how_to:alignretentiontime|Retention time alignment]]** & **[[how_to:recomputeretentiontime|retention time recomputing]]** algorithms may have to be run before creating |
| - | **[[how_to:alignretentiontime|Retention time alignment]]** & **[[how_to:recomputeretentiontime|retention time recomputing]]** algorithms may have to be run before creating | + | |
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how_to/generateamtdb.txt · Last modified: 2012/02/29 12:30 by 132.168.73.124
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