how_to:generateamtdb
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how_to:generateamtdb [2012/02/29 09:39] 132.168.73.124 |
how_to:generateamtdb [2012/02/29 11:57] 132.168.73.124 |
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| * **__Table AMT__**: species of the exported User context | * **__Table AMT__**: species of the exported User context | ||
| + | * AMT_ID: index for this AMT tag (generated) | ||
| + | * AMTMonoisotopicMass: peptide calculated mass | ||
| + | * NET: computed from peptide (aligned) retention time using the formula: NET = (rtSeconds/60 - delayMinutes) / durationMinutes | ||
| + | * PNET: | ||
| + | * MSMS_Obs_Count: | ||
| + | * High_Normalized_Score: peptide score | ||
| + | * High_Discriminant_Score: | ||
| + | * Sequence: peptide sequence | ||
| + | * msidb_peptide_match_id: peptide_match_id used in MSIdb to create this AMT tag | ||
| * **__Table AMT_Proteins__**: proteins on which species match | * **__Table AMT_Proteins__**: proteins on which species match | ||
| * Protein_ID: protein identifier | * Protein_ID: protein identifier | ||
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| * context_is_saved: is the exported context has been saved to MSIdb ? | * context_is_saved: is the exported context has been saved to MSIdb ? | ||
| * msidb_context_id: context identifier in the MSIdb (look at this field only if the context has been saved to MSIdb) | * msidb_context_id: context identifier in the MSIdb (look at this field only if the context has been saved to MSIdb) | ||
| + | * duration_minutes: analysis duration in minutes | ||
| + | * delay_minutes: analysis delay in minutes | ||
| UMCs tables are populated when using '[[how_to:includeumcinamtdb|Read UMCs]]' tool. | UMCs tables are populated when using '[[how_to:includeumcinamtdb|Read UMCs]]' tool. | ||
| {{:how_to:amtexport_relationsmsaccess.png|Relationships in the AMT database (MS Access)}} | {{:how_to:amtexport_relationsmsaccess.png|Relationships in the AMT database (MS Access)}} | ||
how_to/generateamtdb.txt · Last modified: 2012/02/29 12:30 by 132.168.73.124
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