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===== How to access this feature ===== | ===== How to access this feature ===== | ||
- | - Select the context of your choice (for a User context, protein grouping should have been executed) in the MSI Explorer window | + | * Select the context of your choice (for a User context, protein grouping should have been executed) in the MSI Explorer window |
- | - Click on the menu ''MS Identification > Context > Export > Reports'' | + | * Click on the menu ''MS Identification > Context > Export > Reports'' |
- | - Select one of the five reports from the droplist (in the First Step Panel of the Assistant): | + | * Select one of the five reports from the droplist (in the First Step Panel of the Assistant): |
- | * **Protein groups summary**: reports the complete list of protein groups and give predefined properties for each group | + | * **Protein groups summary**: reports the complete list of protein groups and give predefined properties for each group |
- | * **Protein groups details**: reports a detailled description of all protein groups contained in the selected context | + | * **Protein groups details**: reports a detailled description of all protein groups contained in the selected context |
- | * **Same Subset details**: reports a detailled description of all sameset proteins and subset proteins for each protein group | + | * **Same Subset details**: reports a detailled description of all sameset proteins and subset proteins for each protein group |
- | * **Peptide details**: reports a detailled description of all peptides | + | * **Peptide details**: reports a detailled description of all peptides |
- | * **Context customizable summary**: reports the complete list of protein groups specifying which properties to display | + | * **Context customizable summary**: reports the complete list of protein groups specifying which properties to display |
- | - Click ''Next'' | + | * Click ''Next'' |
- | - If you selected the "Context customizable summary" report, you have to fill in the second step panel "Customize Report" (see next section below for details). Click ''Next''. | + | * If you selected the "Context customizable summary" report, you have to fill in the second step panel "Customize Report" (see next section below for details). Click ''Next''. |
- | - In the last panel "Generate Output", select your output format (.xls, .pdf or .html) and your destination filepath. | + | * In the last panel "Generate Output", select your output format (.xls, .pdf or .html) and your destination file. |
{{ :how_to:exportcontext.png |}} | {{ :how_to:exportcontext.png |}} | ||
- | ===== Details about "Context customizable summary (Protein Groups)" Report ===== | + | ===== "Protein groups summary" Report ===== |
- | For this report, a second step is necessary to select the properties to display in the final report.\\ | + | {{ :how_to:exportcontextsumarizeresult.png |}} |
- | The available property list may include user generated properties such as spectral count. \\ | + | |
- | {{ :how_to:exportcontextcustom.png |}} | ||
+ | ===== "Protein groups details" Report ===== | ||
- | ===== Export result ===== | + | This report displays the same information as the "protein groups summary" report but also displays, for each group, the list of identified peptides. |
- | === Protein groups summary / Customizable export === | + | {{ :how_to:exportcontextdetailresult.png |}} |
- | The protein groups summary export will generate a file containing following informations | + | ===== "Same Subset details" Report ===== |
- | {{ :how_to:exportcontextsumarizeresult.png |}} | + | {{ :how_to:exportsamesubsetdetailsreport.png |}} |
- | If **customizable summary** report has been chosen only the selected parameter will be displayed in the protein groups table. | + | ===== "Peptide details" Report ===== |
- | === Protein groups details === | + | All PTMs are in one cell (use Tools->Text to columns and specifiy ';' as a separator to put one PTM per cell).\\ |
+ | All proteins are in one cell (use Tools->Text to columns and specifiy ';' as a separator to put one protein per cell).\\ | ||
+ | |||
+ | {{:how_to:exportpeptidedetailsreport.png|}} | ||
- | The protein groups details report export the same information than protein groups summary export but also display for each group the list of peptide that has been used for identification. | + | ===== "Context customizable summary (Protein Groups)" Report ===== |
- | {{ :how_to:exportcontextdetailresult.png |}} | + | For this report, a second step is necessary to select the properties to display in the final report.\\ |
+ | The available property list may include user generated properties such as spectral count. \\ | ||
+ | |||
+ | {{ :how_to:exportcontextcustom.png |}} |