User Tools

Site Tools


how_to:exportcontext

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
Next revision Both sides next revision
how_to:exportcontext [2010/08/03 11:24]
132.168.74.230
how_to:exportcontext [2010/08/03 11:53]
132.168.74.230
Line 3: Line 3:
 ===== How to access this feature ===== ===== How to access this feature =====
  
-  ​Select the context of your choice (for a User context, protein grouping should have been executed) in the MSI Explorer window  +  ​Select the context of your choice (for a User context, protein grouping should have been executed) in the MSI Explorer window  
-  ​Click on the menu ''​MS Identification > Context > Export > Reports''​ +  ​Click on the menu ''​MS Identification > Context > Export > Reports''​ 
-  ​Select one of the five reports from the droplist (in the First Step Panel of the Assistant):  +  ​Select one of the five reports from the droplist (in the First Step Panel of the Assistant):  
-   ​* **Protein groups summary**: reports the complete list of protein groups and give predefined properties for each group  +     ​* **Protein groups summary**: reports the complete list of protein groups and give predefined properties for each group  
-   ​* **Protein groups details**: reports a detailled description of all protein groups contained in the selected context  +     ​* **Protein groups details**: reports a detailled description of all protein groups contained in the selected context  
-   ​* **Same Subset details**: reports a detailled description of all sameset proteins and subset proteins for each protein group +     ​* **Same Subset details**: reports a detailled description of all sameset proteins and subset proteins for each protein group 
-   ​* **Peptide details**: reports a detailled description of all peptides +     ​* **Peptide details**: reports a detailled description of all peptides 
-   ​* **Context customizable summary**: reports the complete list of protein groups specifying which properties to display +     ​* **Context customizable summary**: reports the complete list of protein groups specifying which properties to display 
-  ​Click ''​Next''​ +  ​Click ''​Next''​ 
-  ​If you selected the "​Context customizable summary"​ report, you have to fill in the second step panel "​Customize Report"​ (see next section below for details). Click ''​Next''​. +  ​If you selected the "​Context customizable summary"​ report, you have to fill in the second step panel "​Customize Report"​ (see next section below for details). Click ''​Next''​. 
-  ​In the last panel "​Generate Output",​ select your output format (.xls, .pdf or .html) and your destination ​filepath.+  ​In the last panel "​Generate Output",​ select your output format (.xls, .pdf or .html) and your destination ​file.
  
 {{ :​how_to:​exportcontext.png |}} {{ :​how_to:​exportcontext.png |}}
Line 25: Line 25:
  
  
-===== Export result ===== +===== "Protein groups summary" Report =====
- +
-=== Protein groups summary ​/ Customizable export  ​=== +
- +
-The protein groups summary export will generate a file containing following informations ​+
  
 {{ :​how_to:​exportcontextsumarizeresult.png |}}  {{ :​how_to:​exportcontextsumarizeresult.png |}} 
  
-If **customizable summary** report has been chosen only the selected parameter will be displayed in the protein groups table. ​ 
  
-=== Protein groups details ===+===== "Protein groups details" Report =====
  
-The protein groups details ​report ​export ​the same information ​than protein groups summary ​export ​but also display ​for each group the list of peptide that has been used for identification.+This report ​displays ​the same information ​as the "protein groups summary" report ​but also displays, ​for each groupthe list of identified peptides.
  
 {{ :​how_to:​exportcontextdetailresult.png |}} {{ :​how_to:​exportcontextdetailresult.png |}}
 +
 +===== "Same Subset details"​ Report =====
 +
 +
 +===== "​Peptide details"​ Report =====
 +
 +
 +
how_to/exportcontext.txt · Last modified: 2011/12/05 18:33 by 132.168.73.124