contextcomparisons
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| Both sides previous revision Previous revision Next revision | Previous revision | ||
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contextcomparisons [2009/12/16 08:15] 132.168.74.230 |
contextcomparisons [2009/12/16 09:19] 132.168.74.230 effacée |
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| The Dice coefficient is used to measure similarity (result ranges from 0 to 1). | The Dice coefficient is used to measure similarity (result ranges from 0 to 1). | ||
| - | {{context:diceCoef.png?102x50}} | + | {{:diceCoef.png?102x50}} |
| ==== Compare two contexts with each other ==== | ==== Compare two contexts with each other ==== | ||
| - | {{context:contextComparison.png?260 }} | + | {{:contextComparison.png?260 }} |
| It compares every protein groups of the first context with every protein groups of the second context.\\ | It compares every protein groups of the first context with every protein groups of the second context.\\ | ||
| Comparing two protein groups each other means: | Comparing two protein groups each other means: | ||
| Line 23: | Line 23: | ||
| Each context is compared with a "unique reference". First of all, this reference is built from the identification union, i.e. the parent context. | Each context is compared with a "unique reference". First of all, this reference is built from the identification union, i.e. the parent context. | ||
| - | |{{context:contextcomparisonn_1.png?280x235}} | {{context:contextcomparisonn_2.png?280x235}} | {{context:contextcomparisonn_3.png?280x235}} | | + | |{{:contextcomparisonn_1.png?280x235}} | {{:contextcomparisonn_2.png?280x235}} | {{:contextcomparisonn_3.png?280x235}} | |
| ===== GUI: Compare contexts each other ===== | ===== GUI: Compare contexts each other ===== | ||
| - | {{:context:compareeachother.png |Compare contexts each other}} | + | {{:compareeachother.png |Compare contexts each other}} |
| - Select the two contexts (for which protein grouping has been executed) you want to compare each other | - Select the two contexts (for which protein grouping has been executed) you want to compare each other | ||
| - Right-click and select "Algorithms->Compare with->Each Other" | - Right-click and select "Algorithms->Compare with->Each Other" | ||
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| - You can save results as a .xls, .pdf or .html file using the "Export" button | - You can save results as a .xls, .pdf or .html file using the "Export" button | ||
| - | {{:context:compareeachotherresultwindow.png|Comparison window (Each other)}} | + | {{:compareeachotherresultwindow.png|Comparison window (Each other)}} |
| ===== GUI: Compare context with its children ===== | ===== GUI: Compare context with its children ===== | ||
| + | {{:comparewithchildren.png |Compare a context with its children}} | ||
| + | - Select the context of your choice (first, protein grouping needs to be run for this context and its childs) | ||
| + | - Right-click and select “Algorithms→Compare with→Children” | ||
| + | - The comparison window display the result | ||
| + | - Select the characteristic you want to compare | ||
| + | {{:comparechildrenresultwindow.png|Result window when comparing context with its children}} | ||
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