Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 28 lcl|NC_021326.1_cdsid_YP_008059001.1 HHsearch (proba=100.00%)
Portal 31 lcl|NC_021326.1_cdsid_YP_008059004.1 HHsearch (proba=100.00%)
TermL 32 lcl|NC_021326.1_cdsid_YP_008059005.1 Blast (e-value=0)
MTP 22 lcl|NC_021326.1_cdsid_YP_008058995.1 Blast (e-value=1e-107)
Sheath NOT FOUND
Ad1 26 lcl|NC_021326.1_cdsid_YP_008058999.1 HHsearch (proba=100.00%)
Hc1 25 lcl|NC_021326.1_cdsid_YP_008058998.1 HHsearch (proba=100.00%)
Ne1 24 lcl|NC_021326.1_cdsid_YP_008058997.1 HHsearch (proba=100.00%)
Tc1 23 lcl|NC_021326.1_cdsid_YP_008058996.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:1239
protein:vir:93742
protein:vir:97433
phi ETA
55
92
100 %
99 %
98 %
Portal protein:vir:93747
protein:vir:1236
protein:vir:97336
55
phi ETA
52A
99 %
99 %
98 %
TermL protein:vir:93748
protein:vir:1235
protein:vir:97273
55
phi ETA
52A
100 %
100 %
99 %
MTP protein:vir:97420
protein:vir:97324
protein:vir:95960
92
52A
71
100 %
100 %
100 %
Ad1 protein:vir:97430
protein:vir:94492
protein:vir:95071
92
88
X2
99 %
99 %
98 %
Hc1 protein:vir:1242
protein:vir:97429
protein:vir:95896
phi ETA
92
71
98 %
97 %
97 %
Ne1 protein:vir:97427
protein:vir:94490
protein:vir:93738
92
88
55
100 %
100 %
100 %
Tc1 protein:vir:97421
protein:vir:94488
protein:vir:93736
92
88
55
100 %
100 %
100 %