Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 34 lcl|NC_021062.1_cdsid_YP_007869911.1 HHsearch (proba=100.00%)
Portal 32 lcl|NC_021062.1_cdsid_YP_007869909.1 HHsearch (proba=100.00%)
TermL 46 lcl|NC_021062.1_cdsid_YP_007869923.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 36 lcl|NC_021062.1_cdsid_YP_007869913.1 HHsearch (proba=100.00%)
Hc3 37 lcl|NC_021062.1_cdsid_YP_007869914.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:8885
protein:vir:94576
protein:vir:94711
gh-1
Berlin
K1F
80 %
75 %
74 %
Portal protein:vir:8883
protein:vir:94572
protein:vir:3361
gh-1
Berlin
T3
78 %
68 %
66 %
TermL protein:vir:8897
protein:vir:94726
protein:vir:99686
gh-1
K1F
VP4
75 %
69 %
68 %
Ad3 protein:vir:8886
protein:vir:10451
protein:vir:94565
gh-1
phiA1122
Berlin
74 %
65 %
64 %
Hc3 protein:vir:8887
protein:vir:94583
protein:vir:3366
gh-1
Berlin
T3
67 %
56 %
55 %