Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 25 lcl|NC_020874.1_cdsid_YP_007677161.1 HHsearch (proba=100.00%)
Portal 31 lcl|NC_020874.1_cdsid_YP_007677167.1 HHsearch (proba=100.00%)
TermL 3 lcl|NC_020874.1_cdsid_YP_007677139.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 23 lcl|NC_020874.1_cdsid_YP_007677159.1 HHsearch (proba=100.00%)
Hc3 22 lcl|NC_020874.1_cdsid_YP_007677158.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:100057
protein:vir:78739
protein:vir:1781
P-SSP7
Syn5
P60
73 %
47 %
39 %
Portal protein:vir:100039
protein:vir:78696
protein:vir:1785
P-SSP7
Syn5
P60
89 %
51 %
50 %
TermL protein:vir:100065
protein:vir:78718
protein:vir:1554
P-SSP7
Syn5
phiYeO3-12
92 %
60 %
45 %
Ad3 protein:vir:100027
protein:vir:78741
protein:vir:1780
P-SSP7
Syn5
P60
79 %
37 %
37 %
Hc3 protein:vir:100022
protein:vir:78703
protein:vir:1778
P-SSP7
Syn5
P60
85 %
28 %
28 %