Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 36 lcl|NC_020872.1_cdsid_YP_007676882.1 HHsearch (proba=100.00%)
Portal 39 lcl|NC_020872.1_cdsid_YP_007676885.1 HHsearch (proba=100.00%)
TermL 14 lcl|NC_020872.1_cdsid_YP_007676860.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 35 lcl|NC_020872.1_cdsid_YP_007676881.1 HHsearch (proba=100.00%)
Hc3 34 lcl|NC_020872.1_cdsid_YP_007676880.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:78739
protein:vir:1781
protein:vir:100057
Syn5
P60
P-SSP7
72 %
60 %
45 %
Portal protein:vir:78696
protein:vir:1785
protein:vir:100039
Syn5
P60
P-SSP7
64 %
60 %
54 %
TermL protein:vir:78718
protein:vir:100065
protein:vir:1554
Syn5
P-SSP7
phiYeO3-12
73 %
63 %
43 %
Ad3 protein:vir:78741
protein:vir:1780
protein:vir:100027
Syn5
P60
P-SSP7
56 %
48 %
39 %
Hc3 protein:vir:78703
protein:vir:1778
protein:vir:100022
Syn5
P60
P-SSP7
57 %
42 %
30 %