Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 40 lcl|NC_020203.1_cdsid_YP_007392803.1 HHsearch (proba=100.00%)
Portal 32 lcl|NC_020203.1_cdsid_YP_007392795.1 HHsearch (proba=100.00%)
TermL 31 lcl|NC_020203.1_cdsid_YP_007392794.1 Blast (e-value=0)
MTP 46 lcl|NC_020203.1_cdsid_YP_007392809.1 Blast (e-value=1e-148)
Sheath NOT FOUND
Ad1 43 lcl|NC_020203.1_cdsid_YP_007392806.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 34 lcl|NC_020203.1_cdsid_YP_007392797.1 HHsearch (proba=100.00%)
Tc1 44 lcl|NC_020203.1_cdsid_YP_007392807.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Ad1 9 3
Ne1<->Tc1 10 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:99228
protein:vir:79246
protein:vir:1991
DMS3
Phage MP22
Mu
100 %
98 %
49 %
Portal protein:vir:99232
protein:vir:79233
protein:vir:103860
DMS3
Phage MP22
D3112
100 %
99 %
78 %
TermL protein:vir:99234
protein:vir:103868
protein:vir:79222
DMS3
D3112
Phage MP22
99 %
96 %
37 %
MTP protein:vir:99223
protein:vir:103876
protein:vir:79254
DMS3
D3112
Phage MP22
100 %
96 %
56 %
Ad1 protein:vir:79253
protein:vir:99222
protein:vir:103846
Phage MP22
DMS3
D3112
99 %
99 %
68 %
Ne1 protein:vir:99196
protein:vir:79225
protein:vir:103841
DMS3
Phage MP22
D3112
100 %
98 %
72 %
Tc1 protein:vir:99226
protein:vir:79247
protein:vir:103883
DMS3
Phage MP22
D3112
100 %
99 %
71 %