Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 40 lcl|NC_020202.1_cdsid_YP_007392744.1 HHsearch (proba=100.00%)
Portal 31 lcl|NC_020202.1_cdsid_YP_007392735.1 HHsearch (proba=100.00%)
TermL 30 lcl|NC_020202.1_cdsid_YP_007392734.1 Blast (e-value=0)
MTP 46 lcl|NC_020202.1_cdsid_YP_007392750.1 Blast (e-value=1e-147)
Sheath NOT FOUND
Ad1 43 lcl|NC_020202.1_cdsid_YP_007392747.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 33 lcl|NC_020202.1_cdsid_YP_007392737.1 HHsearch (proba=100.00%)
Tc1 44 lcl|NC_020202.1_cdsid_YP_007392748.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Ad1 10 3
Ne1<->Tc1 11 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103886
protein:vir:79246
protein:vir:99228
D3112
Phage MP22
DMS3
99 %
39 %
39 %
Portal protein:vir:103860
protein:vir:99232
protein:vir:79233
D3112
DMS3
Phage MP22
99 %
78 %
77 %
TermL protein:vir:79222
protein:vir:99234
protein:vir:103868
Phage MP22
DMS3
D3112
97 %
37 %
37 %
MTP protein:vir:103876
protein:vir:99223
protein:vir:79254
D3112
DMS3
Phage MP22
100 %
96 %
56 %
Ad1 protein:vir:103846
protein:vir:79253
protein:vir:99222
D3112
Phage MP22
DMS3
100 %
67 %
67 %
Ne1 protein:vir:103841
protein:vir:79225
protein:vir:99196
D3112
Phage MP22
DMS3
98 %
72 %
72 %
Tc1 protein:vir:103883
protein:vir:79247
protein:vir:99226
D3112
Phage MP22
DMS3
98 %
71 %
71 %