Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 27 lcl|NC_019930.1_cdsid_YP_007237939.1 HHsearch (proba=97.93%)
Portal 22 lcl|NC_019930.1_cdsid_YP_007237934.1 HHsearch (proba=99.96%)
TermL 20 lcl|NC_019930.1_cdsid_YP_007237932.1 Blast (e-value=7e-28)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 29 lcl|NC_019930.1_cdsid_YP_007237941.1 HHsearch (proba=94.74%)
Hc1 NOT FOUND
Ne1 30 lcl|NC_019930.1_cdsid_YP_007237942.1 HHsearch (proba=100.00%)
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104342
protein:vir:79642
protein:vir:80068
RTP
TLS
B054
16 %
15 %
14 %
Portal protein:vir:94666mu1/619 %
TermL protein:vir:78394
protein:vir:94991
protein:vir:94525
SETP3
KS7
phiJL-1
26 %
26 %
16 %
Ad1 protein:vir:5256
protein:vir:96108
protein:vir:99570
Aaphi23
F8
BcepF1
25 %
19 %
20 %
Ne1 protein:vir:5257
protein:vir:80037
protein:vir:96105
Aaphi23
B054
F8
29 %
23 %
23 %