Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 12 lcl|NC_019549.1_cdsid_YP_007011067.1 HHsearch (proba=100.00%)
Portal 15 lcl|NC_019549.1_cdsid_YP_007011070.1 HHsearch (proba=100.00%)
TermL 17 lcl|NC_019549.1_cdsid_YP_007011072.1 Blast (e-value=3e-49)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 11 lcl|NC_019549.1_cdsid_YP_007011066.1 HHsearch (proba=100.00%)
Hc3 10 lcl|NC_019549.1_cdsid_YP_007011065.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3364
protein:vir:102655
protein:vir:1541
T3
VP2
phiYeO3-12
17 %
17 %
16 %
Portal protein:vir:103765
protein:vir:107822
protein:vir:98506
BcepC6B
BIP-1
BMP-1
26 %
24 %
24 %
TermL protein:vir:95311
protein:vir:7319
protein:vir:3519
phiV10
epsilon15
APSE-1
28 %
28 %
20 %
Ad3 protein:vir:107803
protein:vir:98502
protein:vir:95323
BIP-1
BMP-1
phiV10
26 %
26 %
26 %
Hc3 protein:vir:103790
protein:vir:95324
protein:vir:107802
BcepC6B
phiV10
BIP-1
22 %
21 %
19 %