Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 36 lcl|NC_019528.1_cdsid_YP_007007808.1 HHsearch (proba=100.00%)
Portal 38 lcl|NC_019528.1_cdsid_YP_007007810.1 HHsearch (proba=100.00%)
TermL 27 lcl|NC_019528.1_cdsid_YP_007007799.1 Blast (e-value=1e-117)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 35 lcl|NC_019528.1_cdsid_YP_007007807.1 HHsearch (proba=100.00%)
Hc3 34 lcl|NC_019528.1_cdsid_YP_007007806.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:7019
protein:vir:97031
protein:vir:105645
SP6
K1-5
K1E
28 %
27 %
26 %
Portal protein:vir:96988
protein:vir:94709
protein:vir:7017
K1-5
K1F
SP6
28 %
28 %
28 %
TermL protein:vir:103312
protein:vir:7028
protein:vir:80218
Era103
SP6
LKA1
41 %
40 %
39 %
Ad3 protein:vir:1780
protein:vir:80215
protein:vir:105646
P60
LKA1
K1E
26 %
25 %
23 %
Hc3 protein:vir:94713
protein:vir:105647
protein:vir:103341
K1F
K1E
Era103
21 %
21 %
21 %