Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 113 lcl|NC_019519.1_cdsid_YP_007006569.1 HHsearch (proba=100.00%)
Portal 112 lcl|NC_019519.1_cdsid_YP_007006568.1 HHsearch (proba=100.00%)
TermL 111 lcl|NC_019519.1_cdsid_YP_007006567.1 Blast (e-value=4e-43)
MTP NOT FOUND
Sheath 126 lcl|NC_019519.1_cdsid_YP_007006582.1 HHsearch (proba=100.00%)
Ad1 119 lcl|NC_019519.1_cdsid_YP_007006575.1 HHsearch (proba=86.67%)
Hc1 121 lcl|NC_019519.1_cdsid_YP_007006577.1 HHsearch (proba=96.12%)
Ne1 123 lcl|NC_019519.1_cdsid_YP_007006579.1 HHsearch (proba=95.55%)
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:93616
protein:vir:96762
protein:vir:8324
phi 4795
VP882
Corndog
24 %
11 %
10 %
Portal protein:vir:80134
protein:vir:95378
protein:vir:102080
bacteriophage bv1
GBSV1
Fah
17 %
17 %
17 %
TermL protein:vir:105705
protein:vir:96782
protein:vir:96147
ES18
phiHSIC
37
29 %
27 %
27 %
Sheath protein:vir:4463
protein:vir:4517
protein:vir:489
ST64B
V
P27
22 %
21 %
21 %
Ad1 protein:vir:80320
protein:vir:1435
protein:vir:486
phi644-2
phiE125
P27
15 %
15 %
20 %
Hc1 protein:vir:1272
protein:vir:102144
protein:vir:81177
phi-105
phiSM101
Geobacillus virus E2
16 %
17 %
19 %
Ne1 protein:vir:1988
protein:vir:4906
protein:vir:2740
Mu
Sfi11
O1205
16 %
23 %
23 %