Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phIS3501 | Genbank acc : NC_019502

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 51

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|NC_019502.1_cdsid_YP_007004365.1	HHsearch (proba=100.00%)
Portal	32	lcl\|NC_019502.1_cdsid_YP_007004363.1	HHsearch (proba=100.00%)
TermL	31	lcl\|NC_019502.1_cdsid_YP_007004362.1	Blast (e-value=0)
MTP	39	lcl\|NC_019502.1_cdsid_YP_007004370.1	Blast (e-value=2e-99)
Sheath	NOT FOUND
Ad1	35	lcl\|NC_019502.1_cdsid_YP_007004366.1	HHsearch (proba=100.00%)
Hc1	36	lcl\|NC_019502.1_cdsid_YP_007004367.1	HHsearch (proba=100.00%)
Ne1	37	lcl\|NC_019502.1_cdsid_YP_007004368.1	HHsearch (proba=100.00%)
Tc1	38	lcl\|NC_019502.1_cdsid_YP_007004369.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1268 protein:vir:102082 protein:vir:102873	phi-105 Fah Cherry	43 % 41 % 41 %
Portal	protein:vir:1266 protein:vir:102118 protein:vir:483	phi-105 phiSM101 P27	40 % 34 % 33 %
TermL	protein:vir:81178 protein:vir:1263 protein:vir:102079	Geobacillus virus E2 phi-105 Fah	58 % 48 % 47 %
MTP	protein:vir:102037 protein:vir:102845 protein:vir:107619	Fah Cherry Gamma	84 % 84 % 84 %
Ad1	protein:vir:81159 protein:vir:1384 protein:vir:102083	Geobacillus virus E2 phi3626 Fah	51 % 46 % 45 %
Hc1	protein:vir:102084 protein:vir:102856 protein:vir:107606	Fah Cherry Gamma	86 % 86 % 86 %
Ne1	protein:vir:102085 protein:vir:102875 protein:vir:107568	Fah Cherry Gamma	81 % 81 % 81 %
Tc1	protein:vir:102086 protein:vir:102888 protein:vir:107581	Fah Cherry Gamma	86 % 86 % 86 %