Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 21 lcl|NC_019418.1_cdsid_YP_006990340.1 HHsearch (proba=100.00%)
Portal 24 lcl|NC_019418.1_cdsid_YP_006990343.1 HHsearch (proba=100.00%)
TermL 25 lcl|NC_019418.1_cdsid_YP_006990344.1 Blast (e-value=0)
MTP 14 lcl|NC_019418.1_cdsid_YP_006990333.1 Blast (e-value=3e-42)
Sheath NOT FOUND
Ad1 18 lcl|NC_019418.1_cdsid_YP_006990337.1 HHsearch (proba=100.00%)
Hc1 17 lcl|NC_019418.1_cdsid_YP_006990336.1 HHsearch (proba=100.00%)
Ne1 16 lcl|NC_019418.1_cdsid_YP_006990335.1 HHsearch (proba=100.00%)
Tc1 15 lcl|NC_019418.1_cdsid_YP_006990334.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:9820
protein:vir:3033
protein:vir:3613
315.4
PhiNIH1.1
TP901-1
51 %
51 %
49 %
Portal protein:vir:4782
protein:vir:9815
protein:vir:3028
MM1
315.4
PhiNIH1.1
77 %
63 %
63 %
TermL protein:vir:4781
protein:vir:98922
protein:vir:80960
MM1
BCJA1c
A500
78 %
66 %
53 %
MTP protein:vir:4792
protein:vir:98876
protein:vir:9825
MM1
BCJA1c
315.4
53 %
50 %
45 %
Ad1 protein:vir:4788
protein:vir:9821
protein:vir:3034
MM1
315.4
PhiNIH1.1
72 %
49 %
47 %
Hc1 protein:vir:4789
protein:vir:9822
protein:vir:3035
MM1
315.4
PhiNIH1.1
58 %
43 %
43 %
Ne1 protein:vir:4790
protein:vir:9823
protein:vir:3036
MM1
315.4
PhiNIH1.1
48 %
44 %
44 %
Tc1 protein:vir:4791
protein:vir:9824
protein:vir:3037
MM1
315.4
PhiNIH1.1
53 %
44 %
44 %