Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 31 lcl|NC_019416.1_cdsid_YP_006990233.1 HHsearch (proba=100.00%)
Portal 29 lcl|NC_019416.1_cdsid_YP_006990231.1 HHsearch (proba=100.00%)
TermL 44 lcl|NC_019416.1_cdsid_YP_006990246.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 33 lcl|NC_019416.1_cdsid_YP_006990235.1 HHsearch (proba=100.00%)
Hc3 34 lcl|NC_019416.1_cdsid_YP_006990236.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:10450
protein:vir:2201
protein:vir:94576
phiA1122
T7
Berlin
83 %
82 %
76 %
Portal protein:vir:10447
protein:vir:2198
protein:vir:3361
phiA1122
T7
T3
92 %
92 %
85 %
TermL protein:vir:10462
protein:vir:2213
protein:vir:3376
phiA1122
T7
T3
91 %
91 %
86 %
Ad3 protein:vir:10451
protein:vir:2202
protein:vir:3365
phiA1122
T7
T3
88 %
88 %
79 %
Hc3 protein:vir:10452
protein:vir:2203
protein:vir:1543
phiA1122
T7
phiYeO3-12
78 %
78 %
67 %