Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 36 lcl|NC_019403.1_cdsid_YP_006987798.1 HHsearch (proba=100.00%)
Portal 34 lcl|NC_019403.1_cdsid_YP_006987796.1 HHsearch (proba=100.00%)
TermL 46 lcl|NC_019403.1_cdsid_YP_006987808.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 37 lcl|NC_019403.1_cdsid_YP_006987799.1 HHsearch (proba=100.00%)
Hc3 38 lcl|NC_019403.1_cdsid_YP_006987800.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:105645
protein:vir:7019
protein:vir:97031
K1E
SP6
K1-5
97 %
94 %
85 %
Portal protein:vir:105641
protein:vir:96988
protein:vir:7017
K1E
K1-5
SP6
99 %
98 %
86 %
TermL protein:vir:97005
protein:vir:105656
protein:vir:7028
K1-5
K1E
SP6
100 %
96 %
79 %
Ad3 protein:vir:105646
protein:vir:97033
protein:vir:7020
K1E
K1-5
SP6
99 %
98 %
87 %
Hc3 protein:vir:105647
protein:vir:97014
protein:vir:7021
K1E
K1-5
SP6
98 %
96 %
83 %