Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|NC_018838.1_cdsid_YP_006906407.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_018838.1_cdsid_YP_006906404.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_018838.1_cdsid_YP_006906403.1 Blast (e-value=0)
MTP 11 lcl|NC_018838.1_cdsid_YP_006906412.1 Blast (e-value=1e-105)
Sheath NOT FOUND
Ad1 7 lcl|NC_018838.1_cdsid_YP_006906408.1 HHsearch (proba=100.00%)
Hc1 8 lcl|NC_018838.1_cdsid_YP_006906409.1 HHsearch (proba=100.00%)
Ne1 9 lcl|NC_018838.1_cdsid_YP_006906410.1 HHsearch (proba=100.00%)
Tc1 10 lcl|NC_018838.1_cdsid_YP_006906411.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:80684
protein:vir:8187
protein:vir:99920
PA6
Che9d
Halo
97 %
38 %
33 %
Portal protein:vir:80680
protein:vir:2427
protein:vir:7768
PA6
D29
Bxz2
95 %
28 %
27 %
TermL protein:vir:80678
protein:vir:9572
protein:vir:2499
PA6
SM1
TM4
96 %
28 %
26 %
MTP protein:vir:80670
protein:vir:9765
protein:vir:9580
PA6
315.3
SM1
93 %
25 %
25 %
Ad1 protein:vir:80668
protein:vir:99922
protein:vir:8189
PA6
Halo
Che9d
93 %
43 %
35 %
Hc1 protein:vir:80661
protein:vir:81216
protein:vir:1641
PA6
BFK20
r1t
92 %
23 %
17 %
Ne1 protein:vir:80665
protein:vir:94763
protein:vir:1642
PA6
phi LC3
r1t
93 %
31 %
31 %
Tc1 protein:vir:80662
protein:vir:1643
protein:vir:98426
PA6
r1t
VWB
92 %
11 %
22 %