Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 10 lcl|NC_016767.1_cdsid_YP_005098414.1 HHsearch (proba=100.00%)
Portal 7 lcl|NC_016767.1_cdsid_YP_005098411.1 HHsearch (proba=100.00%)
TermL 3 lcl|NC_016767.1_cdsid_YP_005098407.1 Blast (e-value=1e-168)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 13 lcl|NC_016767.1_cdsid_YP_005098417.1 HHsearch (proba=100.00%)
Hc3 21 lcl|NC_016767.1_cdsid_YP_005098425.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad3<->Hc3 8 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:93696
protein:vir:104439
protein:vir:10123
Bcep22
86
Stx2 converting bacteriophage II
65 %
30 %
30 %
Portal protein:vir:93630
protein:vir:10117
protein:vir:9950
Bcep22
Stx2 converting bacteriophage II
Stx1 converting bacteriophage
52 %
26 %
26 %
TermL protein:vir:93626
protein:vir:105593
protein:vir:104436
Bcep22
F116
86
57 %
50 %
28 %
Ad3 protein:vir:5111
protein:vir:3302
protein:vir:2779
PBC5
933W
Stx2 converting bacteriophage I
37 %
29 %
29 %
Hc3 protein:vir:93631
protein:vir:5120
protein:vir:104388
Bcep22
PBC5
86
47 %
41 %
29 %