Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RcapMu | Genbank acc : NC_016165

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	42	lcl\|NC_016165.1_cdsid_YP_004934685.1	HHsearch (proba=100.00%)
Portal	36	lcl\|NC_016165.1_cdsid_YP_004934679.1	HHsearch (proba=100.00%)
TermL	32	lcl\|NC_016165.1_cdsid_YP_004934675.1	Blast (e-value=1e-150)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	45	lcl\|NC_016165.1_cdsid_YP_004934688.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	38	lcl\|NC_016165.1_cdsid_YP_004934681.1	HHsearch (proba=100.00%)
Tc1	46	lcl\|NC_016165.1_cdsid_YP_004934689.1	HHsearch (proba=97.42%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	7	3
Ne1<->Tc1	8	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79078 protein:vir:107882 protein:vir:99888	phiE255 BcepMu B3	33 % 33 % 20 %
Portal	protein:vir:99853 protein:vir:79063 protein:vir:107880	B3 phiE255 BcepMu	33 % 28 % 28 %
TermL	protein:vir:99234 protein:vir:103868 protein:vir:79222	DMS3 D3112 Phage MP22	47 % 47 % 36 %
Ad1	protein:vir:99848 protein:vir:103846 protein:vir:1993	B3 D3112 Mu	33 % 33 % 30 %
Ne1	protein:vir:79225 protein:vir:99833 protein:vir:99196	Phage MP22 B3 DMS3	35 % 35 % 34 %
Tc1	protein:vir:99874 protein:vir:4461 protein:vir:488	B3 ST64B P27	22 % 19 % 19 %