Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 4 lcl|NC_016164.1_cdsid_YP_004934604.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_016164.1_cdsid_YP_004934603.1 HHsearch (proba=100.00%)
TermL 1 lcl|NC_016164.1_cdsid_YP_004934601.1 Blast (e-value=1e-58)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 2 lcl|NC_016164.1_cdsid_YP_004934602.1 HHsearch (proba=100.00%)
Hc1 9 lcl|NC_016164.1_cdsid_YP_004934609.1 HHsearch (proba=97.54%)
Ne1 43 lcl|NC_016164.1_cdsid_YP_004934643.1 HHsearch (proba=99.04%)
Tc1 11 lcl|NC_016164.1_cdsid_YP_004934611.1 HHsearch (proba=99.25%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 7 2
Ne1<->Hc1 34 2
Tc1<->Ad1 9 4
Ne1<->Ad1 41 3
Ne1<->Tc1 32 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:96762
protein:vir:105038
protein:vir:5739
VP882
phiKO2
PY54
32 %
20 %
20 %
Portal protein:vir:96738
protein:vir:79538
protein:vir:10321
VP882
cdtI
VHML
29 %
27 %
27 %
TermL protein:vir:10320
protein:vir:79539
protein:vir:3418
VHML
cdtI
lambda
27 %
26 %
26 %
Ad1 protein:vir:96750
protein:vir:79544
VP882
cdtI
25 %
17 %
Hc1 protein:vir:395
protein:vir:3426
N15
lambda
26 %
22 %
Ne1 protein:vir:396
protein:vir:96763
protein:vir:6375
N15
VP882
BcepNazgul
14 %
12 %
16 %
Tc1 protein:vir:79571
protein:vir:397
protein:vir:3428
cdtI
N15
lambda
18 %
15 %
13 %