Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 5 lcl|NC_016160.1_cdsid_YP_004934112.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_016160.1_cdsid_YP_004934110.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_016160.1_cdsid_YP_004934109.1 Blast (e-value=0)
MTP 10 lcl|NC_016160.1_cdsid_YP_004934117.1 Blast (e-value=1e-136)
Sheath NOT FOUND
Ad1 6 lcl|NC_016160.1_cdsid_YP_004934113.1 HHsearch (proba=100.00%)
Hc1 7 lcl|NC_016160.1_cdsid_YP_004934114.1 HHsearch (proba=100.00%)
Ne1 8 lcl|NC_016160.1_cdsid_YP_004934115.1 HHsearch (proba=100.00%)
Tc1 9 lcl|NC_016160.1_cdsid_YP_004934116.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:1886
protein:vir:191
protein:vir:4339
HK022
HK97
D3
100 %
100 %
40 %
Portal protein:vir:1884
protein:vir:189
protein:vir:100150
HK022
HK97
phi1026b
100 %
98 %
33 %
TermL protein:vir:188
protein:vir:1883
protein:vir:81178
HK97
HK022
Geobacillus virus E2
100 %
99 %
28 %
MTP protein:vir:196
protein:vir:93600
protein:vir:100083
HK97
phi 4795
phi1026b
100 %
67 %
38 %
Ad1 protein:vir:1887
protein:vir:192
protein:vir:4512
HK022
HK97
V
100 %
100 %
22 %
Hc1 protein:vir:193
protein:vir:93599
protein:vir:1890
HK97
phi 4795
HK022
99 %
45 %
27 %
Ne1 protein:vir:194
protein:vir:93617
protein:vir:100243
HK97
phi 4795
Bcep176
99 %
75 %
44 %
Tc1 protein:vir:195
protein:vir:93602
protein:vir:81066
HK97
phi 4795
Xop411
100 %
49 %
24 %