Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 8 lcl|NC_015938.1_cdsid_YP_004782383.1 HHsearch (proba=100.00%)
Portal 5 lcl|NC_015938.1_cdsid_YP_004782380.1 HHsearch (proba=100.00%)
TermL 4 lcl|NC_015938.1_cdsid_YP_004782379.1 Blast (e-value=2e-96)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 12 lcl|NC_015938.1_cdsid_YP_004782387.1 HHsearch (proba=100.00%)
Hc3 18 lcl|NC_015938.1_cdsid_YP_004782393.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad3<->Hc3 6 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:8843
protein:vir:103370
protein:vir:96442
PaP3
PaP2
119X
27 %
15 %
13 %
Portal protein:vir:8846
protein:vir:345
protein:vir:93630
PaP3
Mx8
Bcep22
24 %
17 %
15 %
TermL protein:vir:8847
protein:vir:100942
protein:vir:9262
PaP3
ST104
ST64T
39 %
35 %
35 %
Ad3 protein:vir:8841
protein:vir:351
protein:vir:3302
PaP3
Mx8
933W
21 %
11 %
11 %
Hc3 protein:vir:8837
protein:vir:2625
protein:vir:108312
PaP3
SIO1
BA3
30 %
14 %
13 %